Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712423 . G A CCDS10868.1:NM_001793.4:c.410aGa>aAa_NP_001784.2:p.137R>K Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 ARG A:31 A:30 223.0 0.991 G -72.9 -31.8 223.0 0.991 0.0
ARG B:31 B:30 223.0 0.991 T -75.0 -30.4 223.0 0.991 0.0
ARG C:31 C:30 232.0 1.0 T -68.0 -40.9 NA NA NA
ARG D:31 NA:NA DO NA DO DO DO NA NA NA
ARG E:31 E:30 229.0 1.0 T -62.6 -36.3 NA NA NA
ARG F:31 NA:NA DO NA DO DO DO NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 ARG A:30 A:30 189.0 0.84 G -70.3 -22.6 189.0 0.84 0.0 HOH
 3.173
 O
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 ARG A:32 I:137 194.0 0.862 G -60.2 -34.6 194.0 0.862 0.0 HOH
 6.318
 N
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 ARG D:32 I:137 204.0 0.907 G -64.3 -26.2 NA NA NA
ARG E:32 J:137 205.0 0.911 G -64.2 -26.6 205.0 0.911 0.0 HOH
 6.868
 N
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 ARG A:31 A:30 180.0 0.8 S -73.5 -43.6 180.0 0.8 0.0 HOH
 2.503
 O
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 ARG A:31 A:30 177.0 0.787 T -93.3 -23.7 177.0 0.787 0.0 HOH
 7.447
 NH2
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 ARG A:31 NA:NA DO NA DO DO DO NA NA NA
ARG B:31 B:30 226.0 1.0 S -68.7 -58.9 226.0 1.0 0.0
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 ARG A:31 A:30 91.0 NA G -66.5 -1.6 91.0 NA NA
ARG B:31 B:30 103.0 NA S -104.7 -7.0 103.0 NA NA
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 ARG A:30 A:30 188.0 0.836 G -81.1 -28.6 188.0 0.836 0.0 HOH
 2.473
 NH2
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 ARG A:30 A:30 196.0 0.871 G -61.1 -40.6 196.0 0.871 0.0 HOH
 2.597
 NH2
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 ARG A:30 A:30 184.0 0.818 T -64.4 -31.5 184.0 0.818 0.0 HOH
 6.785
 N
 O
ARG C:30 C:30 186.0 0.827 T -68.5 -30.0 186.0 0.827 0.0 HOH
 6.535
 N
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 ARG A:30 A:30 191.0 0.849 G -60.2 -43.9 191.0 0.849 0.0 HOH
 9.502
 N
 O
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 ARG A:31 A:30 192.0 0.853 G -70.2 -30.4 84.0 0.373 0.48 A:P22223:0.48
 HOH
 3.874
 NH1
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 ARG A:30 A:30 184.0 0.818 G -57.2 -54.9 170.0 0.756 0.062 A:P22223:0.062
 HOH
 4.302
 NH2
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 ARG A:31 A:30 175.0 0.778 G -76.7 -10.6 175.0 0.778 0.0
ARG B:31 B:30 187.0 0.831 G -79.7 -29.1 187.0 0.831 0.0 SO4
 9.153
 C
 O4
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 ARG A:30 NA:NA DO NA DO DO DO NA NA NA
ARG B:30 B:30 228.0 1.0 S -79.9 -39.8 228.0 1.0 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 ARG A:31 A:30 193.0 0.858 G -57.8 -41.6 173.0 0.769 0.089 B:P22223:0.089
 NI
HOH
 8.083
6.147
 NH2
NH2
 NI
O
ARG B:31 B:30 183.0 0.813 G -75.5 -18.4 183.0 0.813 0.0
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 ARG A:30 A:30 227.0 1.0 T -61.0 -38.1 227.0 1.0 0.0 HOH
 7.327
 HD3
 O
ARG B:30 B:30 243.0 1.0 T -63.2 -36.8 243.0 1.0 0.0 HOH
 3.223
 HB2
 O
ARG C:30 C:30 204.0 0.907 T -61.9 -35.0 NA NA NA
ARG D:30 D:30 220.0 0.978 T -60.4 -37.6 NA NA NA
5jyl 1 P22223 100.0 3e-63 X-RAY
 2016-12-28 ARG A:31 A:30 220.0 0.978 T -69.7 -29.3 49.0 0.218 0.76 B:None:0.76
 HOH
 2.943
 N
 O
ARG C:31 C:30 217.0 0.964 T -69.7 -29.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 ARG A:137 A:137 218.0 0.969 T -74.2 -31.1