Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712470 . C A CCDS10868.1:NM_001793.4:c.457Ccc>Acc_NP_001784.2:p.153P>T Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 PRO A:47 A:46 101.0 0.697 S -69.7 139.3 101.0 0.697 0.0
PRO B:47 B:46 103.0 0.71 S -70.1 139.3 103.0 0.71 0.0 HOH
 3.197
 CB
 O
PRO C:47 C:46 99.0 0.683 S -67.8 138.5 NA NA NA
PRO D:47 D:46 102.0 0.703 S -70.3 139.6 NA NA NA
PRO E:47 E:46 103.0 0.71 S -67.8 138.9 NA NA NA
PRO F:47 F:46 105.0 0.724 S -68.2 139.2 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 PRO A:46 A:46 101.0 0.697 S -63.6 136.5 101.0 0.697 0.0 HOH
 3.648
 CB
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 PRO A:48 I:153 98.0 0.676 S -51.1 132.9 98.0 0.676 0.0 HOH
 2.725
 O
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 PRO D:48 I:153 108.0 0.745 S -59.7 139.1 NA NA NA
PRO E:48 J:153 109.0 0.752 S -60.6 138.4 26.0 0.179 0.573 A:None:0.572
 HOH
 2.658
 O
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 PRO A:47 A:46 101.0 0.697 S -57.9 136.1 101.0 0.697 0.0 HOH
 3.822
 CA
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 PRO A:47 A:46 101.0 0.697 S -55.2 132.4 101.0 0.697 0.0 HOH
 9.258
 N
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 PRO A:47 A:46 96.0 0.662 S -51.0 135.1 96.0 0.662 0.0 HOH
 3.643
 CA
 O
PRO B:47 B:46 100.0 0.69 S -50.0 123.7 100.0 0.69 0.0 HOH
 2.515
 O
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 PRO A:47 A:46 96.0 0.662 S -61.0 146.2 96.0 0.662 0.0 CA
 9.300
 C
 CA
PRO B:47 B:46 97.0 0.669 S -61.1 142.3 97.0 0.669 0.0 CA
 9.193
 C
 CA
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 PRO A:46 A:46 98.0 0.676 S -61.0 137.5 98.0 0.676 0.0 HOH
 2.695
 O
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 PRO A:46 A:46 98.0 0.676 S -54.6 130.8 33.0 0.228 0.448 A:P22223:0.448
 HOH
 2.634
 O
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 PRO A:46 A:46 94.0 0.648 S -62.7 153.2 94.0 0.648 0.0 CA
HOH
 6.276
3.607
 CD
N
 CA
O
PRO C:46 C:46 92.0 0.634 S -63.4 153.2 92.0 0.634 0.0 HOH
 4.976
 N
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 PRO A:46 A:46 99.0 0.683 S -58.0 137.4 99.0 0.683 0.0 HOH
 6.266
 N
 O
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 PRO A:47 A:46 99.0 0.683 S -55.2 135.3 99.0 0.683 0.0 HOH
 2.636
 O
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 PRO A:46 A:46 101.0 0.697 S -68.4 134.5 101.0 0.697 0.0 HOH
 3.025
 O
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 PRO A:47 A:46 92.0 0.634 S -65.4 146.0 92.0 0.634 0.0 HOH
 6.675
 O
 O
PRO B:47 B:46 95.0 0.655 S -64.4 143.7 95.0 0.655 0.0
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 PRO A:46 A:46 89.0 0.614 S -67.2 144.0 89.0 0.614 0.0
PRO B:46 B:46 99.0 0.683 S -49.3 130.5 99.0 0.683 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 PRO A:47 A:46 99.0 0.683 S -52.2 132.5 99.0 0.683 0.0 HOH
 6.420
 O
 O
PRO B:47 B:46 96.0 0.662 S -55.4 136.8 96.0 0.662 0.0 HOH
 6.318
 O
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 PRO A:46 A:46 113.0 0.779 S -59.6 132.0 113.0 0.779 0.0
PRO B:46 B:46 100.0 0.69 S -60.2 132.4 100.0 0.69 0.0 HOH
 8.610
 HD3
 O
PRO C:46 C:46 105.0 0.724 S -60.1 131.8 NA NA NA
PRO D:46 D:46 110.0 0.759 S -59.4 132.1 NA NA NA
5jyl 1 P22223 100.0 3e-63 X-RAY
 2016-12-28 PRO A:47 A:46 95.0 0.655 S -61.4 141.2 95.0 0.655 0.0 HOH
 9.954
 C
 O
PRO C:47 C:46 97.0 0.669 S -57.8 139.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 PRO A:153 A:153 99.0 0.683 S -52.8 139.1