Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712491 . G A CCDS10868.1:NM_001793.4:c.478Gta>Ata_NP_001784.2:p.160V>I Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 VAL A:54 A:53 26.0 0.168 E -133.2 139.7 26.0 0.168 0.0 HOH
 2.762
 N
 O
VAL B:54 B:53 25.0 0.161 E -133.7 140.6 25.0 0.161 0.0 HOH
 6.329
 C
 O
VAL C:54 C:53 26.0 0.168 E -134.7 138.3 NA NA NA
VAL D:54 D:53 28.0 0.181 E -134.0 141.6 NA NA NA
VAL E:54 E:53 27.0 0.174 E -133.8 141.7 NA NA NA
VAL F:54 F:53 23.0 0.148 E -133.7 141.2 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 VAL A:53 A:53 25.0 0.161 E -119.3 144.0 25.0 0.161 0.0 HOH
 2.782
 N
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 VAL A:55 I:160 25.0 0.161 E -131.3 137.7 25.0 0.161 0.0 HOH
 3.116
 N
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 VAL D:55 I:160 27.0 0.174 E -131.8 146.0 NA NA NA
VAL E:55 J:160 27.0 0.174 E -131.4 145.5 16.0 0.103 0.071 B:None:0.071
 HOH
 3.236
 N
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 VAL A:54 A:53 24.0 0.155 E -135.1 133.0 24.0 0.155 0.0 HOH
 2.905
 N
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 VAL A:54 A:53 23.0 0.148 E -128.0 141.0 23.0 0.148 0.0 HOH
 7.528
 CA
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 VAL A:54 A:53 26.0 0.168 E -139.4 151.1 26.0 0.168 0.0
VAL B:54 B:53 26.0 0.168 E -133.7 145.7 26.0 0.168 0.0 HOH
 2.934
 N
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 VAL A:54 A:53 22.0 0.142 E -125.4 138.5 22.0 0.142 0.0
VAL B:54 B:53 21.0 0.135 E -126.6 143.0 21.0 0.135 0.0 HOH
 3.118
 N
 O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 VAL A:53 A:53 22.0 0.142 E -126.5 138.8 22.0 0.142 0.0 HOH
 3.020
 O
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 VAL A:53 A:53 23.0 0.148 E -129.7 137.5 23.0 0.148 0.0 CL
HOH
 6.526
2.987
 O
N
 CL
O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 VAL A:53 A:53 25.0 0.161 E -129.2 142.2 2.0 0.013 0.148 B:None:0.148
 HOH
 3.793
 CG1
 O
VAL C:53 C:53 25.0 0.161 E -128.8 145.1 3.0 0.019 0.142 D:None:0.142
 HOH
 7.012
 N
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 VAL A:53 A:53 24.0 0.155 E -131.3 134.5 24.0 0.155 0.0 HOH
 3.027
 N
 O
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 VAL A:54 A:53 22.0 0.142 E -132.3 137.9 22.0 0.142 0.0 HOH
 2.773
 O
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 VAL A:53 A:53 24.0 0.155 E -123.4 133.5 24.0 0.155 0.0 HOH
 3.053
 N
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 VAL A:54 A:53 18.0 0.116 E -120.8 124.5 18.0 0.116 0.0 HOH
 4.637
 N
 O
VAL B:54 B:53 23.0 0.148 E -124.2 131.6 23.0 0.148 0.0 HOH
 4.323
 O
 O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 VAL A:53 A:53 24.0 0.155 E -140.4 129.3 24.0 0.155 0.0
VAL B:53 B:53 23.0 0.148 E -142.3 135.4 23.0 0.148 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 VAL A:54 A:53 20.0 0.129 E -138.6 143.7 20.0 0.129 0.0 HOH
 4.556
 O
 O
VAL B:54 B:53 25.0 0.161 E -133.8 139.0 25.0 0.161 0.0 HOH
 9.569
 CG1
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 ILE A:53 A:53 22.0 0.126 E -145.2 130.2 22.0 0.126 0.0 CU
HOH
 9.909
8.372
 N
H
 CU
O
ILE B:53 B:53 23.0 0.131 E -146.2 128.5 23.0 0.131 0.0 HOH
 3.589
 O
 O
ILE C:53 C:53 27.0 0.154 E -148.1 129.3 NA NA NA
ILE D:53 D:53 19.0 0.109 E -145.5 130.2 NA NA NA
5jyl 1 P22223 100.0 3e-63 X-RAY
 2016-12-28 VAL A:54 A:53 27.0 0.174 E -144.0 146.6 27.0 0.174 0.0 HOH
 3.124
 N
 O
VAL C:54 C:53 27.0 0.174 E -143.4 146.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 VAL A:160 A:160 26.0 0.168 E -128.2 133.1