Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712559 . G A CCDS10868.1:NM_001793.4:c.546gaG>gaA_NP_001784.2:p.182E>E Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 GLU A:76 A:75 77.0 0.405 E -122.3 107.5 77.0 0.405 0.0
GLU B:76 B:75 77.0 0.405 E -122.7 108.3 77.0 0.405 0.0 HOH
 2.781
 N
 O
GLU C:76 C:75 78.0 0.411 E -122.5 108.2 NA NA NA
GLU D:76 D:75 72.0 0.379 E -122.1 107.9 NA NA NA
GLU E:76 E:75 70.0 0.368 E -122.7 107.8 NA NA NA
GLU F:76 F:75 64.0 0.337 E -123.1 107.8 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 GLU A:75 A:75 90.0 0.474 E -131.2 122.3 26.0 0.137 0.337 A:P22223:0.337
 HOH
 2.761
 O
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 GLU A:77 I:182 68.0 0.358 E -125.0 105.6 68.0 0.358 0.0 HOH
 2.712
 O
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 GLU D:77 I:182 65.0 0.342 E -125.8 110.2 NA NA NA
GLU E:77 J:182 65.0 0.342 E -126.1 110.0 65.0 0.342 0.0 HOH
 2.753
 O
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 GLU A:76 A:75 83.0 0.437 E -117.5 111.2 83.0 0.437 0.0 HOH
 6.562
 O
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 GLU A:76 A:75 61.0 0.321 E -128.1 96.7 61.0 0.321 0.0 HOH
 2.145
 OE2
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 GLU A:76 A:75 80.0 0.421 E -125.8 108.1 80.0 0.421 0.0 HOH
 2.906
 N
 O
GLU B:76 B:75 79.0 0.416 E -126.0 106.3 79.0 0.416 0.0 HOH
 2.869
 OE1
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 GLU A:76 A:75 79.0 0.416 E -125.4 104.5 79.0 0.416 0.0 G60
 9.776
 OE1
 H111
GLU B:76 B:75 81.0 0.426 E -124.8 106.8 81.0 0.426 0.0 G60
HOH
 9.384
6.613
 OE1
OE2
 CL
O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 GLU A:75 A:75 107.0 0.563 E -124.6 106.7 107.0 0.563 0.0 HOH
 2.936
 N
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 GLU A:75 A:75 115.0 0.605 E -124.9 103.5 115.0 0.605 0.0 HOH
 2.667
 OE2
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 GLU A:75 A:75 72.0 0.379 E -127.9 117.0 72.0 0.379 0.0 HOH
 4.671
 N
 O
GLU C:75 C:75 64.0 0.337 E -126.0 115.0 64.0 0.337 0.0 HOH
 6.845
 O
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 GLU A:75 A:75 81.0 0.426 E -113.3 109.3 81.0 0.426 0.0 HOH
 6.912
 OE1
 O
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 GLU A:76 A:75 77.0 0.405 E -128.9 107.7 77.0 0.405 0.0 HOH
 2.828
 O
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 GLU A:75 A:75 107.0 0.563 E -131.6 111.4 107.0 0.563 0.0 HOH
 2.850
 O
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 GLU A:76 A:75 60.0 0.316 E -114.9 118.2 60.0 0.316 0.0 HOH
 2.863
 N
 O
GLU B:76 B:75 63.0 0.332 E -113.9 101.9 63.0 0.332 0.0
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 GLU A:75 A:75 77.0 0.405 E -127.8 98.9 77.0 0.405 0.0
GLU B:75 B:75 84.0 0.442 E -122.8 96.1 84.0 0.442 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 GLU A:76 A:75 81.0 0.426 E -122.9 105.1 81.0 0.426 0.0 HOH
 2.909
 N
 O
GLU B:76 B:75 69.0 0.363 E -126.4 109.6 69.0 0.363 0.0 HOH
 2.874
 N
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 GLU A:75 A:75 65.0 0.342 E -118.8 96.1 65.0 0.342 0.0
GLU B:75 B:75 59.0 0.311 E -118.2 96.7 59.0 0.311 0.0 HOH
 3.410
 HB3
 O
GLU C:75 C:75 69.0 0.363 E -118.3 97.5 NA NA NA
GLU D:75 D:75 61.0 0.321 E -116.6 96.0 NA NA NA
5jyl 1 P22223 100.0 3e-63 X-RAY
 2016-12-28 GLU A:76 A:75 88.0 0.463 E -123.4 114.5 88.0 0.463 0.0
GLU C:76 C:75 79.0 0.416 E -123.5 114.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 GLU A:182 A:182 88.0 0.463 E -120.5 107.7