Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712731 . G A CCDS10868.1:NM_001793.4:c.613Gtg>Atg_NP_001784.2:p.205V>M Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 VAL A:99 A:98 5.0 0.032 E -91.3 112.6 5.0 0.032 0.0 CA
CA
HOH
 7.726
8.082
7.001
 CG1
O
N
 CA
CA
O
VAL B:99 B:98 5.0 0.032 E -91.9 112.4 5.0 0.032 0.0 CA
CA
HOH
 7.650
8.199
7.025
 CG1
O
CG2
 CA
CA
O
VAL C:99 C:98 5.0 0.032 E -92.5 112.9 NA NA NA
VAL D:99 D:98 5.0 0.032 E -90.7 112.7 NA NA NA
VAL E:99 E:98 5.0 0.032 E -92.2 113.2 NA NA NA
VAL F:99 F:98 5.0 0.032 E -93.1 112.8 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 VAL A:98 A:98 5.0 0.032 E -86.1 112.7 5.0 0.032 0.0 CA
CA
HOH
 7.607
8.007
4.432
 CG1
CG1
O
 CA
CA
O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 VAL A:100 I:205 5.0 0.032 E -88.1 118.0 5.0 0.032 0.0 CA
CA
HOH
 7.475
8.085
2.786
 CG1
CG1
O
 CA
CA
O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 VAL D:100 I:205 4.0 0.026 E -96.2 114.0 NA NA NA
VAL E:100 J:205 5.0 0.032 E -98.0 114.7 5.0 0.032 0.0 CA
CA
HOH
 8.258
7.309
2.647
 CG1
CG1
O
 CA
CA
O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 VAL A:99 A:98 4.0 0.026 E -103.5 109.7 4.0 0.026 0.0 CA
CA
HOH
 8.085
7.504
4.038
 O
CG1
CG2
 CA
CA
O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 VAL A:99 A:98 7.0 0.045 E -99.7 118.5 7.0 0.045 0.0 CA
CA
G60
HOH
 8.343
7.707
3.426
5.755
 CG1
CG1
O
CG1
 CA
CA
H52
O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 VAL A:99 A:98 6.0 0.039 E -92.9 118.9 6.0 0.039 0.0 CA
CA
HOH
 7.684
8.284
2.885
 CG1
CG1
O
 CA
CA
O
VAL B:99 B:98 5.0 0.032 E -88.3 112.8 5.0 0.032 0.0 CA
CA
HOH
 7.569
8.125
4.188
 CG1
CG1
CG2
 CA
CA
O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 VAL A:99 A:98 5.0 0.032 E -89.3 111.6 5.0 0.032 0.0 G60
G60
CA
CA
HOH
 3.401
9.093
7.889
7.433
4.161
 O
C
CG1
CG2
CG2
 H11
H13
CA
CA
O
VAL B:99 B:98 5.0 0.032 E -89.6 112.1 5.0 0.032 0.0 G60
G60
CA
CA
HOH
 8.738
4.368
7.819
7.448
3.956
 CG1
O
CG1
CG2
CG2
 H61
H121
CA
CA
O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 VAL A:98 A:98 6.0 0.039 E -96.2 119.4 6.0 0.039 0.0 CA
CA
HOH
 8.097
7.461
2.768
 CG1
CG1
O
 CA
CA
O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 VAL A:98 A:98 4.0 0.026 E -96.2 120.3 4.0 0.026 0.0 CA
CA
CL
HOH
 8.123
7.504
4.866
2.859
 CG1
CG1
O
O
 CA
CA
CL
O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 VAL A:98 A:98 5.0 0.032 E -91.9 115.6 5.0 0.032 0.0 CA
CA
HOH
 7.463
8.174
5.764
 CG1
CG1
CG1
 CA
CA
O
VAL C:98 C:98 4.0 0.026 E -90.1 114.7 4.0 0.026 0.0 CA
CA
HOH
 8.107
7.608
3.933
 CG1
CG1
CG2
 CA
CA
O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 VAL A:98 A:98 5.0 0.032 E -92.0 126.3 5.0 0.032 0.0 CA
HOH
 7.978
4.217
 CG1
CG2
 CA
O
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 VAL A:99 A:98 5.0 0.032 E -95.4 119.8 5.0 0.032 0.0 CA
CA
HOH
 8.176
7.473
2.649
 CG1
CG1
O
 CA
CA
O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 VAL A:98 A:98 5.0 0.032 E -85.1 121.3 5.0 0.032 0.0 CA
CA
HOH
 7.993
7.416
3.910
 CG1
CG1
CG2
 CA
CA
O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 VAL A:99 A:98 6.0 0.039 E -94.4 120.8 6.0 0.039 0.0 CA
SO4
HOH
 7.770
8.491
4.229
 CG1
O
CG2
 CA
O3
O
VAL B:99 B:98 5.0 0.032 E -89.7 113.6 5.0 0.032 0.0 CA
HOH
 7.827
4.526
 CG1
O
 CA
O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 VAL A:98 A:98 7.0 0.045 E -97.4 111.7 7.0 0.045 0.0 CA
CA
 7.737
8.151
 CG1
CG1
 CA
CA
VAL B:98 B:98 4.0 0.026 E -88.4 105.4 4.0 0.026 0.0 CA
CA
 7.725
8.092
 CG1
CG1
 CA
CA
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 VAL A:99 A:98 4.0 0.026 E -91.4 106.9 4.0 0.026 0.0 CA
HOH
 7.857
3.940
 O
CG2
 CA
O
VAL B:99 B:98 4.0 0.026 E -87.8 107.6 4.0 0.026 0.0 CA
HOH
 7.978
4.586
 O
O
 CA
O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 VAL A:98 A:98 3.0 0.019 E -99.0 119.6 3.0 0.019 0.0 CA
CA
HOH
 7.084
7.194
4.346
 HG11
HG12
O
 CA
CA
O
VAL B:98 B:98 3.0 0.019 E -97.0 122.1 3.0 0.019 0.0 CA
CA
HOH
 6.869
7.101
5.602
 HG11
HG12
HG21
 CA
CA
O
VAL C:98 C:98 4.0 0.026 E -95.9 120.3 NA NA NA
VAL D:98 D:98 1.0 0.006 E -95.0 120.8 NA NA NA
5jyl 1 P22223 100.0 3e-63 X-RAY
 2016-12-28 VAL A:99 A:98 9.0 0.058 E -93.9 126.7 9.0 0.058 0.0 HOH
 5.963
 CG1
 O
VAL C:99 C:98 4.0 0.026 E -95.0 127.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 VAL A:205 A:205 6.0 0.039 E -78.9 126.4