Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712774 . C A CCDS10868.1:NM_001793.4:c.656aCc>aAc_NP_001784.2:p.219T>N Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 THR A:113 A:112 57.0 0.407 E -137.2 119.6 57.0 0.407 0.0
THR B:113 B:112 58.0 0.414 E -137.3 119.4 58.0 0.414 0.0
THR C:113 C:112 38.0 0.271 E -136.5 118.9 NA NA NA
THR D:113 D:112 56.0 0.4 E -137.8 120.1 NA NA NA
THR E:113 E:112 57.0 0.407 E -136.9 119.4 NA NA NA
THR F:113 F:112 55.0 0.393 E -136.5 120.1 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 THR A:112 A:112 54.0 0.386 E -132.0 135.3 54.0 0.386 0.0 HOH
 3.625
 N
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 THR A:114 I:219 52.0 0.371 E -128.9 118.8 52.0 0.371 0.0 HOH
 2.815
 O
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 THR D:114 I:219 52.0 0.371 E -127.3 126.1 NA NA NA
THR E:114 J:219 48.0 0.343 E -128.6 126.4 48.0 0.343 0.0
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 THR A:113 A:112 57.0 0.407 E -138.2 129.3 57.0 0.407 0.0 HOH
 4.860
 N
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 THR A:113 A:112 69.0 0.493 E -139.7 114.8 69.0 0.493 0.0
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 THR A:113 A:112 58.0 0.414 E -128.0 127.1 58.0 0.414 0.0 HOH
 3.216
 N
 O
THR B:113 B:112 65.0 0.464 E -130.3 123.6 65.0 0.464 0.0 HOH
 4.354
 OG1
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 THR A:113 A:112 54.0 0.386 E -138.1 115.2 54.0 0.386 0.0
THR B:113 B:112 46.0 0.329 E -134.5 127.5 46.0 0.329 0.0
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 THR A:112 A:112 56.0 0.4 E -132.9 125.9 56.0 0.4 0.0 HOH
 2.702
 OG1
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 THR A:112 A:112 53.0 0.379 E -135.0 115.1 53.0 0.379 0.0 HOH
 3.485
 N
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 THR A:112 A:112 68.0 0.486 E -127.7 130.7 68.0 0.486 0.0 HOH
 9.538
 O
 O
THR C:112 C:112 60.0 0.429 E -127.6 129.8 60.0 0.429 0.0 CA
HOH
 8.898
3.062
 N
N
 CA
O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 THR A:112 A:112 52.0 0.371 E -144.7 118.8 52.0 0.371 0.0
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 THR A:113 A:112 58.0 0.414 E -134.2 130.5 58.0 0.414 0.0 HOH
 2.598
 OG1
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 THR A:112 A:112 54.0 0.386 E -131.7 121.5 54.0 0.386 0.0 HOH
 6.909
 N
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 THR A:113 A:112 58.0 0.414 E -139.5 121.8 54.0 0.386 0.028 B:P22223:0.029
 HOH
 3.559
 N
 O
THR B:113 B:112 47.0 0.336 E -132.6 133.2 47.0 0.336 0.0 SO4
SO4
HOH
 9.321
3.991
2.792
 N
O
O
 O3
O4
O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 THR A:112 A:112 58.0 0.414 E -131.0 124.6 58.0 0.414 0.0
THR B:112 B:112 68.0 0.486 E -132.9 128.1 68.0 0.486 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 THR A:113 A:112 54.0 0.386 E -128.5 123.5 54.0 0.386 0.0 HOH
 9.957
 O
 O
THR B:113 B:112 49.0 0.35 E -136.5 113.6 49.0 0.35 0.0 HOH
 9.885
 CG2
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 THR A:112 A:112 59.0 0.421 E -147.5 131.7 59.0 0.421 0.0
THR B:112 B:112 59.0 0.421 E -147.3 131.5 59.0 0.421 0.0 HOH
 7.455
 HB
 O
THR C:112 C:112 49.0 0.35 E -146.2 130.8 NA NA NA
THR D:112 D:112 55.0 0.393 E -148.0 132.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 THR A:219 A:219 64.0 0.457 E -144.6 124.7