Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68712779 . C A CCDS10868.1:NM_001793.4:c.661Cga>Aga_NP_001784.2:p.221R>R Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 ARG A:115 A:114 182.0 0.809 E -127.7 138.9 182.0 0.809 0.0
ARG B:115 B:114 181.0 0.804 E -127.8 139.4 181.0 0.804 0.0
ARG C:115 C:114 184.0 0.818 E -127.4 139.4 NA NA NA
ARG D:115 D:114 181.0 0.804 E -127.7 139.6 NA NA NA
ARG E:115 E:114 181.0 0.804 E -127.7 139.7 NA NA NA
ARG F:115 F:114 202.0 0.898 -131.9 360.0 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 ARG A:114 A:114 180.0 0.8 E -113.2 132.6 180.0 0.8 0.0 HOH
 4.885
 NH1
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 ARG A:116 I:221 174.0 0.773 E -124.0 129.9 174.0 0.773 0.0 NA
HOH
 7.316
2.685
 O
NE
 NA
O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 ARG D:116 I:221 184.0 0.818 E -115.8 120.6 NA NA NA
ARG E:116 J:221 185.0 0.822 E -115.5 121.0 185.0 0.822 0.0
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 ARG A:115 A:114 183.0 0.813 E -128.1 140.4 183.0 0.813 0.0 HOH
 3.511
 CB
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 ARG A:115 A:114 170.0 0.756 E -120.7 149.9 170.0 0.756 0.0 HOH
 5.566
 NH1
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 ARG A:115 A:114 175.0 0.778 E -129.6 141.3 175.0 0.778 0.0 HOH
 2.461
 NE
 O
ARG B:115 B:114 177.0 0.787 E -122.7 132.4 177.0 0.787 0.0 HOH
 7.600
 O
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 ARG A:115 A:114 181.0 0.804 E -127.6 125.2 181.0 0.804 0.0
ARG B:115 B:114 188.0 0.836 E -120.7 128.2 188.0 0.836 0.0
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 ARG A:114 A:114 176.0 0.782 E -124.7 144.5 176.0 0.782 0.0 HOH
 2.566
 NE
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 ARG A:114 A:114 178.0 0.791 E -126.4 131.8 178.0 0.791 0.0 HOH
 3.095
 N
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 ARG A:114 A:114 136.0 0.604 E -123.9 145.3 136.0 0.604 0.0 HOH
 4.916
 O
 O
ARG C:114 C:114 170.0 0.756 E -123.3 143.3 170.0 0.756 0.0 HOH
 8.174
 NE
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 ARG A:114 A:114 185.0 0.822 E -132.9 131.1 185.0 0.822 0.0
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 ARG A:115 A:114 176.0 0.782 E -120.9 142.7 176.0 0.782 0.0 HOH
 2.402
 NE
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 ARG A:114 A:114 177.0 0.787 E -123.6 136.2 177.0 0.787 0.0 HOH
 4.914
 O
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 ARG A:115 A:114 174.0 0.773 E -137.9 140.2 110.0 0.489 0.284 B:P22223:0.284
 HOH
 3.368
 O
 O
ARG B:115 B:114 185.0 0.822 E -107.0 155.6 106.0 0.471 0.351 A:P22223:0.351
 SO4
HOH
 2.952
3.405
 N
NH2
 O4
O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 ARG A:114 A:114 173.0 0.769 E -136.9 145.0 173.0 0.769 0.0
ARG B:114 B:114 181.0 0.804 E -132.9 116.3 181.0 0.804 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 ARG A:115 A:114 180.0 0.8 E -116.9 132.7 180.0 0.8 0.0 HOH
 4.973
 O
 O
ARG B:115 B:114 182.0 0.809 E -112.0 143.5 182.0 0.809 0.0 HOH
 5.454
 O
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 ARG A:114 A:114 218.0 0.969 E -113.1 133.5 218.0 0.969 0.0
ARG B:114 B:114 222.0 0.987 E -114.0 132.7 222.0 0.987 0.0 HOH
 7.669
 O
 O
ARG C:114 C:114 165.0 0.733 E -110.7 132.9 NA NA NA
ARG D:114 D:114 213.0 0.947 E -112.5 133.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 ARG A:221 A:221 178.0 0.791 E -127.0 138.1