Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68713815 . A C CCDS10868.1:NM_001793.4:c.805Atg>Ctg_NP_001784.2:p.269M>L Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 MET A:163 A:162 1.0 0.005 -89.7 -33.7 1.0 0.005 0.0
MET B:163 B:162 0.0 0.0 -88.1 -32.8 0.0 0.0 0.0
MET C:163 C:162 0.0 0.0 -92.3 -30.7 NA NA NA
MET D:163 D:162 0.0 0.0 -88.9 -33.5 NA NA NA
MET E:163 E:162 0.0 0.0 -87.0 -33.4 NA NA NA
MET F:163 F:162 160.0 0.865 -78.3 -9.7 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 MET A:162 A:162 0.0 0.0 -82.3 -24.6 0.0 0.0 0.0
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 MET A:164 I:269 0.0 0.0 S -88.5 -17.9 0.0 0.0 0.0 NA
HOH
 7.201
3.502
 CE
N
 NA
O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 MET D:164 I:269 1.0 0.005 S -88.7 -32.2 NA NA NA
MET E:164 J:269 1.0 0.005 S -88.8 -32.0 1.0 0.005 0.0 HOH
 9.772
 O
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 MET A:163 A:162 0.0 0.0 -82.9 -8.4 0.0 0.0 0.0 HOH
 3.514
 N
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 MET A:163 A:162 0.0 0.0 -84.6 -1.8 0.0 0.0 0.0 HOH
 9.480
 N
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 MET A:163 A:162 0.0 0.0 -77.7 -12.1 0.0 0.0 0.0 HOH
 3.618
 N
 O
MET B:163 B:162 0.0 0.0 -79.1 -16.1 0.0 0.0 0.0 HOH
 4.859
 N
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 MET A:163 A:162 0.0 0.0 -80.8 -31.8 0.0 0.0 0.0 HOH
 6.660
 SD
 O
MET B:163 B:162 1.0 0.005 -75.8 -31.2 1.0 0.005 0.0 HOH
 9.402
 O
 O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 MET A:162 A:162 0.0 0.0 -79.0 -11.3 0.0 0.0 0.0 HOH
 3.438
 N
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 MET A:162 A:162 0.0 0.0 -78.2 -26.7 0.0 0.0 0.0 HOH
 3.431
 N
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 MET A:162 A:162 0.0 0.0 S -68.5 -30.3 0.0 0.0 0.0
MET C:162 C:162 0.0 0.0 S -63.6 -29.5 0.0 0.0 0.0 HOH
 9.237
 O
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 MET A:162 A:162 0.0 0.0 -97.2 -18.8 0.0 0.0 0.0
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 MET A:163 A:162 0.0 0.0 -79.8 -10.9 0.0 0.0 0.0 HOH
 3.396
 N
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 MET A:162 A:162 0.0 0.0 -89.5 -25.4 0.0 0.0 0.0 HOH
 5.698
 CE
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 MET A:163 A:162 0.0 0.0 S -83.1 -15.8 0.0 0.0 0.0
MET B:163 B:162 0.0 0.0 S -81.7 -14.1 0.0 0.0 0.0 HOH
 7.621
 CE
 O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 MET A:162 A:162 0.0 0.0 -83.9 -9.0 0.0 0.0 0.0
MET B:162 B:162 1.0 0.005 -96.7 -15.7 1.0 0.005 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 MET A:163 A:162 0.0 0.0 -75.8 -37.4 0.0 0.0 0.0 HOH
 6.335
 CE
 O
MET B:163 B:162 1.0 0.005 S -87.4 -38.6 1.0 0.005 0.0 HOH
 4.078
 CE
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 MET A:162 A:162 0.0 0.0 -88.0 -24.6 0.0 0.0 0.0
MET B:162 B:162 0.0 0.0 -90.1 -25.0 0.0 0.0 0.0
MET C:162 C:162 0.0 0.0 S -88.9 -25.1 NA NA NA
MET D:162 D:162 0.0 0.0 S -89.4 -24.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 MET A:269 A:269 0.0 0.0 S -81.8 -30.3