Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68713840 . G A CCDS10868.1:NM_001793.4:c.830gGc>gAc_NP_001784.2:p.277G>D Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 GLY A:171 A:170 0.0 0.0 77.3 7.8 0.0 0.0 0.0
GLY B:171 B:170 0.0 0.0 76.8 7.6 0.0 0.0 0.0
GLY C:171 C:170 0.0 0.0 77.2 7.8 NA NA NA
GLY D:171 D:170 0.0 0.0 77.3 7.2 NA NA NA
GLY E:171 E:170 0.0 0.0 76.7 7.7 NA NA NA
GLY F:171 F:170 0.0 0.0 76.2 7.4 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 GLY A:170 A:170 0.0 0.0 57.4 24.2 0.0 0.0 0.0 HOH
 6.073
 N
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 GLY A:172 I:277 0.0 0.0 79.4 9.7 0.0 0.0 0.0 HOH
 4.635
 CA
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 GLY D:172 I:277 0.0 0.0 80.5 11.7 NA NA NA
GLY E:172 J:277 0.0 0.0 80.5 11.7 0.0 0.0 0.0 HOH
 6.218
 C
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 GLY A:171 A:170 0.0 0.0 79.6 14.9 0.0 0.0 0.0 HOH
 4.725
 N
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 GLY A:171 A:170 0.0 0.0 78.7 15.7 0.0 0.0 0.0 HOH
 5.832
 N
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 GLY A:171 A:170 0.0 0.0 71.0 18.0 0.0 0.0 0.0 HOH
 4.433
 N
 O
GLY B:171 B:170 0.0 0.0 68.5 11.7 0.0 0.0 0.0 HOH
 4.370
 CA
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 GLY A:171 A:170 0.0 0.0 81.0 8.0 0.0 0.0 0.0 HOH
 5.881
 N
 O
GLY B:171 B:170 0.0 0.0 78.6 18.2 0.0 0.0 0.0 HOH
 5.590
 N
 O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 GLY A:170 A:170 0.0 0.0 77.8 12.0 0.0 0.0 0.0 HOH
 4.777
 N
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 GLY A:170 A:170 0.0 0.0 72.2 7.3 0.0 0.0 0.0 HOH
 4.605
 CA
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 GLY A:170 A:170 0.0 0.0 82.3 9.1 0.0 0.0 0.0 HOH
 5.798
 N
 O
GLY C:170 C:170 0.0 0.0 81.3 8.2 0.0 0.0 0.0 HOH
 6.200
 C
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 GLY A:170 A:170 0.0 0.0 70.7 11.9 0.0 0.0 0.0
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 GLY A:171 A:170 0.0 0.0 78.3 11.7 0.0 0.0 0.0 HOH
 4.615
 N
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 GLY A:170 A:170 0.0 0.0 73.2 -5.6 0.0 0.0 0.0 HOH
 4.671
 N
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 GLY A:171 A:170 0.0 0.0 74.0 15.5 0.0 0.0 0.0 HOH
 6.017
 N
 O
GLY B:171 B:170 0.0 0.0 68.5 14.8 0.0 0.0 0.0 HOH
 4.515
 N
 O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 GLY A:170 A:170 0.0 0.0 74.0 13.1 0.0 0.0 0.0
GLY B:170 B:170 0.0 0.0 76.9 13.9 0.0 0.0 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 GLY A:171 A:170 0.0 0.0 79.0 19.9 0.0 0.0 0.0 HOH
 7.086
 O
 O
GLY B:171 B:170 0.0 0.0 83.3 6.4 0.0 0.0 0.0 HOH
 5.560
 N
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 GLY A:170 A:170 0.0 0.0 82.2 27.0 0.0 0.0 0.0 HOH
 8.298
 HA3
 O
GLY B:170 B:170 0.0 0.0 81.6 27.4 0.0 0.0 0.0 HOH
 7.103
 O
 O
GLY C:170 C:170 0.0 0.0 83.7 28.6 NA NA NA
GLY D:170 D:170 0.0 0.0 83.0 28.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 GLY A:277 A:277 0.0 0.0 69.5 15.4