Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68714889 . C A CCDS10868.1:NM_001793.4:c.886Ctg>Atg_NP_001784.2:p.296L>M Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 LEU A:190 A:189 0.0 0.0 E -104.3 125.6 0.0 0.0 0.0
LEU B:190 B:189 0.0 0.0 E -103.3 124.2 0.0 0.0 0.0
LEU C:190 C:189 0.0 0.0 E -102.2 124.7 NA NA NA
LEU D:190 D:189 0.0 0.0 E -103.7 124.5 NA NA NA
LEU E:190 E:189 1.0 0.006 E -102.5 125.0 NA NA NA
LEU F:190 F:189 15.0 0.088 E -102.9 124.3 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 LEU A:189 A:189 0.0 0.0 E -99.7 121.2 0.0 0.0 0.0 HOH
 4.016
 C
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 LEU A:191 I:296 0.0 0.0 E -105.7 129.3 0.0 0.0 0.0 HOH
 3.870
 CD2
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 LEU D:191 I:296 1.0 0.006 E -96.8 126.4 NA NA NA
LEU E:191 J:296 0.0 0.0 E -96.1 122.3 0.0 0.0 0.0
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 LEU A:190 A:189 0.0 0.0 E -108.1 118.9 0.0 0.0 0.0 HOH
 3.899
 CD2
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 LEU A:190 A:189 1.0 0.006 E -88.9 141.1 1.0 0.006 0.0 HOH
 8.854
 CD1
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 LEU A:190 A:189 0.0 0.0 E -110.3 125.7 0.0 0.0 0.0 1PE
HOH
 9.643
3.968
 C
CD2
 C24
O
LEU B:190 B:189 1.0 0.006 E -121.8 129.1 1.0 0.006 0.0 HOH
 8.007
 O
 O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 LEU A:190 A:189 1.0 0.006 E -101.5 121.1 1.0 0.006 0.0 HOH
 7.228
 CD2
 O
LEU B:190 B:189 0.0 0.0 E -96.2 127.9 0.0 0.0 0.0 HOH
 8.903
 CD1
 O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 LEU A:189 A:189 1.0 0.006 E -97.6 134.4 1.0 0.006 0.0 HOH
 3.932
 C
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 LEU A:189 A:189 1.0 0.006 E -109.0 124.5 1.0 0.006 0.0 HOH
 3.775
 CD2
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 LEU A:189 A:189 1.0 0.006 E -116.9 129.1 1.0 0.006 0.0
LEU C:189 C:189 0.0 0.0 E -116.1 129.6 0.0 0.0 0.0 HOH
 4.085
 CA
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 LEU A:189 A:189 0.0 0.0 E -105.3 124.4 0.0 0.0 0.0
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 LEU A:190 A:189 1.0 0.006 E -105.4 127.8 1.0 0.006 0.0 HOH
 3.885
 C
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 LEU A:189 A:189 0.0 0.0 E -115.2 128.9 0.0 0.0 0.0 HOH
 6.727
 N
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 LEU A:190 A:189 0.0 0.0 E -104.2 117.7 0.0 0.0 0.0
LEU B:190 B:189 0.0 0.0 E -101.0 123.5 0.0 0.0 0.0
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 LEU A:189 A:189 0.0 0.0 E -114.7 122.5 0.0 0.0 0.0
LEU B:189 B:189 0.0 0.0 E -100.6 128.6 0.0 0.0 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 LEU A:190 A:189 1.0 0.006 E -102.9 128.5 1.0 0.006 0.0
LEU B:190 B:189 0.0 0.0 E -109.5 123.4 0.0 0.0 0.0 HOH
 6.493
 N
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 LEU A:189 A:189 0.0 0.0 E -91.4 139.1 0.0 0.0 0.0 CU
HOH
 9.974
9.032
 C
HA
 CU
O
LEU B:189 B:189 0.0 0.0 E -92.3 138.3 0.0 0.0 0.0 CU
HOH
 9.448
5.575
 C
O
 CU
O
LEU C:189 C:189 0.0 0.0 E -91.1 138.3 NA NA NA
LEU D:189 D:189 0.0 0.0 E -92.2 139.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 LEU A:296 A:296 0.0 0.0 E -106.0 128.5