Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr16 | 68714898 | . | C | A | CCDS10868.1:NM_001793.4:c.895Cag>Aag_NP_001784.2:p.299Q>K | Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4zmt | 1 | P22223 | 100.0 | 1e-163 |
X-RAY |
2016-09-07 | GLN | A:193 | A:192 | 42.0 | 0.233 | E | -137.5 | 144.6 | 42.0 | 0.233 | 0.0 | ||||||
GLN | B:193 | B:192 | 42.0 | 0.233 | E | -138.6 | 143.4 | 42.0 | 0.233 | 0.0 | |||||||||||||
GLN | C:193 | C:192 | 41.0 | 0.228 | E | -137.8 | 144.3 | NA | NA | NA | |||||||||||||
GLN | D:193 | D:192 | 42.0 | 0.233 | E | -137.0 | 144.9 | NA | NA | NA | |||||||||||||
GLN | E:193 | E:192 | 43.0 | 0.239 | E | -138.2 | 143.1 | NA | NA | NA | |||||||||||||
GLN | F:193 | F:192 | 51.0 | 0.283 | E | -138.9 | 143.1 | NA | NA | NA | |||||||||||||
4zmn | 1 | P22223 | 100.0 | 1e-163 |
X-RAY |
2016-09-07 | GLN | A:192 | A:192 | 43.0 | 0.239 | E | -120.5 | 149.3 | 43.0 | 0.239 | 0.0 |
GOL HOH |
3.878 3.596 |
OE1 O |
O1 O |
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6ztb | 1 | P22223 | 100.0 | 1e-151 |
X-RAY |
2021-05-05 | GLN | A:194 | I:299 | 40.0 | 0.222 | E | -124.6 | 145.1 | 40.0 | 0.222 | 0.0 |
HOH |
3.301 |
OE1 |
O |
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6ztr | 3 | P22223 | 100.0 | 1e-151 |
X-RAY |
2021-05-05 | GLN | D:194 | I:299 | 44.0 | 0.244 | E | -126.6 | 147.2 | NA | NA | NA | ||||||
GLN | E:194 | J:299 | 40.0 | 0.222 | E | -120.8 | 150.5 | 40.0 | 0.222 | 0.0 |
HOH |
3.640 |
O |
O |
|||||||||
4zmz | 1 | P22223 | 100.0 | 1e-149 |
X-RAY |
2016-09-07 | GLN | A:193 | A:192 | 44.0 | 0.244 | E | -130.6 | 148.8 | 44.0 | 0.244 | 0.0 |
HOH |
3.268 |
O |
O |
||
7cmf | 1 | P22223 | 100.0 | 1e-149 |
X-RAY |
2021-09-15 | GLN | A:193 | A:192 | 41.0 | 0.228 | E | -126.5 | 152.1 | 41.0 | 0.228 | 0.0 |
HOH |
6.626 |
NE2 |
O |
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4zmq | 1 | P22223 | 100.0 | 9e-149 |
X-RAY |
2016-09-07 | GLN | A:193 | A:192 | 46.0 | 0.256 | E | -133.4 | 144.8 | 46.0 | 0.256 | 0.0 |
1PE HOH |
8.120 3.483 |
OE1 O |
C13 O |
||
GLN | B:193 | B:192 | 43.0 | 0.239 | E | -145.5 | 151.7 | 43.0 | 0.239 | 0.0 |
HOH |
3.348 |
O |
O |
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7cme | 1 | P22223 | 100.0 | 9e-149 |
X-RAY |
2021-09-15 | GLN | A:193 | A:192 | 44.0 | 0.244 | E | -134.8 | 148.9 | 44.0 | 0.244 | 0.0 |
G60 HOH |
6.751 3.240 |
NE2 O |
CL O |
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GLN | B:193 | B:192 | 42.0 | 0.233 | E | -134.8 | 149.6 | 42.0 | 0.233 | 0.0 |
G60 HOH |
4.485 3.436 |
OE1 O |
N6 O |
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4oy9 | 1 | P22223 | 100.0 | 9e-149 |
X-RAY |
2015-04-01 | GLN | A:192 | A:192 | 45.0 | 0.25 | E | -128.5 | 151.0 | 45.0 | 0.25 | 0.0 |
HOH |
3.379 |
O |
O |
||
4zml | 1 | P22223 | 100.0 | 9e-149 |
X-RAY |
2016-09-07 | GLN | A:192 | A:192 | 41.0 | 0.228 | E | -131.0 | 145.7 | 41.0 | 0.228 | 0.0 |
HOH |
3.286 |
O |
O |
||
5jym | 1 | P22223 | 100.0 | 9e-149 |
X-RAY |
2016-12-28 | GLN | A:192 | A:192 | 45.0 | 0.25 | E | -128.1 | 145.0 | 45.0 | 0.25 | 0.0 |
HOH |
3.274 |
O |
O |
||
GLN | C:192 | C:192 | 44.0 | 0.244 | E | -126.8 | 146.2 | 44.0 | 0.244 | 0.0 |
HOH |
8.554 |
C |
O |
|||||||||
4zmo | 1 | P22223 | 99.53 | 4e-148 |
X-RAY |
2016-09-07 | GLN | A:192 | A:192 | 43.0 | 0.239 | E | -135.1 | 147.8 | 43.0 | 0.239 | 0.0 |
HOH |
7.908 |
OE1 |
O |
||
4zmy | 1 | P22223 | 99.53 | 4e-148 |
X-RAY |
2016-09-07 | GLN | A:193 | A:192 | 47.0 | 0.261 | E | -131.1 | 149.9 | 47.0 | 0.261 | 0.0 |
HOH |
3.316 |
O |
O |
||
4zmp | 1 | P22223 | 99.53 | 2e-147 |
X-RAY |
2016-09-07 | GLN | A:192 | A:192 | 36.0 | 0.2 | E | -133.7 | 144.1 | 36.0 | 0.2 | 0.0 |
HOH |
9.154 |
O |
O |
||
4zmw | 1 | P22223 | 99.53 | 2e-147 |
X-RAY |
2016-09-07 | GLN | A:193 | A:192 | 43.0 | 0.239 | E | -137.5 | 145.6 | 43.0 | 0.239 | 0.0 |
HOH |
7.217 |
O |
O |
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GLN | B:193 | B:192 | 43.0 | 0.239 | E | -139.2 | 148.6 | 43.0 | 0.239 | 0.0 |
HOH |
3.413 |
O |
O |
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4zmx | 1 | P22223 | 99.53 | 3e-147 |
X-RAY |
2016-09-07 | GLN | A:192 | A:192 | 46.0 | 0.256 | E | -129.1 | 146.5 | 46.0 | 0.256 | 0.0 | ||||||
GLN | B:192 | B:192 | 47.0 | 0.261 | E | -141.9 | 138.5 | 47.0 | 0.261 | 0.0 | |||||||||||||
4zmv | 1 | P22223 | 98.59 | 5e-146 |
X-RAY |
2016-09-07 | GLN | A:193 | A:192 | 40.0 | 0.222 | E | -129.3 | 150.8 | 40.0 | 0.222 | 0.0 |
HOH |
3.536 |
O |
O |
||
GLN | B:193 | B:192 | 38.0 | 0.211 | E | -135.3 | 152.1 | 38.0 | 0.211 | 0.0 |
HOH |
3.672 |
O |
O |
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4nqq | 1 | P10287 | 88.26 | 4e-132 |
X-RAY |
2014-09-24 | GLN | A:192 | A:192 | 38.0 | 0.211 | E | -131.1 | 136.9 | 38.0 | 0.211 | 0.0 |
CU HOH |
8.523 8.265 |
OE1 OE1 |
CU O |
||
GLN | B:192 | B:192 | 40.0 | 0.222 | E | -132.4 | 136.2 | 40.0 | 0.222 | 0.0 |
CU HOH |
7.912 7.821 |
HE21 HE22 |
CU O |
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GLN | C:192 | C:192 | 35.0 | 0.194 | E | -129.9 | 139.5 | NA | NA | NA | |||||||||||||
GLN | D:192 | D:192 | 36.0 | 0.2 | E | -131.8 | 137.9 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p22223-f1 | 1 | P22223 | 100.0 | 0.0 | GLN | A:299 | A:299 | 38.0 | 0.211 | E | -125.3 | 132.9 |