Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68714898 . C A CCDS10868.1:NM_001793.4:c.895Cag>Aag_NP_001784.2:p.299Q>K Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
2016-09-07 GLN A:193 A:192 42.0 0.233 E -137.5 144.6 42.0 0.233 0.0
GLN B:193 B:192 42.0 0.233 E -138.6 143.4 42.0 0.233 0.0
GLN C:193 C:192 41.0 0.228 E -137.8 144.3 NA NA NA
GLN D:193 D:192 42.0 0.233 E -137.0 144.9 NA NA NA
GLN E:193 E:192 43.0 0.239 E -138.2 143.1 NA NA NA
GLN F:193 F:192 51.0 0.283 E -138.9 143.1 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
2016-09-07 GLN A:192 A:192 43.0 0.239 E -120.5 149.3 43.0 0.239 0.0 GOL
HOH
3.878
3.596
OE1
O
O1
O
6ztb 1 P22223 100.0 1e-151 X-RAY
2021-05-05 GLN A:194 I:299 40.0 0.222 E -124.6 145.1 40.0 0.222 0.0 HOH
3.301
OE1
O
6ztr 3 P22223 100.0 1e-151 X-RAY
2021-05-05 GLN D:194 I:299 44.0 0.244 E -126.6 147.2 NA NA NA
GLN E:194 J:299 40.0 0.222 E -120.8 150.5 40.0 0.222 0.0 HOH
3.640
O
O
4zmz 1 P22223 100.0 1e-149 X-RAY
2016-09-07 GLN A:193 A:192 44.0 0.244 E -130.6 148.8 44.0 0.244 0.0 HOH
3.268
O
O
7cmf 1 P22223 100.0 1e-149 X-RAY
2021-09-15 GLN A:193 A:192 41.0 0.228 E -126.5 152.1 41.0 0.228 0.0 HOH
6.626
NE2
O
4zmq 1 P22223 100.0 9e-149 X-RAY
2016-09-07 GLN A:193 A:192 46.0 0.256 E -133.4 144.8 46.0 0.256 0.0 1PE
HOH
8.120
3.483
OE1
O
C13
O
GLN B:193 B:192 43.0 0.239 E -145.5 151.7 43.0 0.239 0.0 HOH
3.348
O
O
7cme 1 P22223 100.0 9e-149 X-RAY
2021-09-15 GLN A:193 A:192 44.0 0.244 E -134.8 148.9 44.0 0.244 0.0 G60
HOH
6.751
3.240
NE2
O
CL
O
GLN B:193 B:192 42.0 0.233 E -134.8 149.6 42.0 0.233 0.0 G60
HOH
4.485
3.436
OE1
O
N6
O
4oy9 1 P22223 100.0 9e-149 X-RAY
2015-04-01 GLN A:192 A:192 45.0 0.25 E -128.5 151.0 45.0 0.25 0.0 HOH
3.379
O
O
4zml 1 P22223 100.0 9e-149 X-RAY
2016-09-07 GLN A:192 A:192 41.0 0.228 E -131.0 145.7 41.0 0.228 0.0 HOH
3.286
O
O
5jym 1 P22223 100.0 9e-149 X-RAY
2016-12-28 GLN A:192 A:192 45.0 0.25 E -128.1 145.0 45.0 0.25 0.0 HOH
3.274
O
O
GLN C:192 C:192 44.0 0.244 E -126.8 146.2 44.0 0.244 0.0 HOH
8.554
C
O
4zmo 1 P22223 99.53 4e-148 X-RAY
2016-09-07 GLN A:192 A:192 43.0 0.239 E -135.1 147.8 43.0 0.239 0.0 HOH
7.908
OE1
O
4zmy 1 P22223 99.53 4e-148 X-RAY
2016-09-07 GLN A:193 A:192 47.0 0.261 E -131.1 149.9 47.0 0.261 0.0 HOH
3.316
O
O
4zmp 1 P22223 99.53 2e-147 X-RAY
2016-09-07 GLN A:192 A:192 36.0 0.2 E -133.7 144.1 36.0 0.2 0.0 HOH
9.154
O
O
4zmw 1 P22223 99.53 2e-147 X-RAY
2016-09-07 GLN A:193 A:192 43.0 0.239 E -137.5 145.6 43.0 0.239 0.0 HOH
7.217
O
O
GLN B:193 B:192 43.0 0.239 E -139.2 148.6 43.0 0.239 0.0 HOH
3.413
O
O
4zmx 1 P22223 99.53 3e-147 X-RAY
2016-09-07 GLN A:192 A:192 46.0 0.256 E -129.1 146.5 46.0 0.256 0.0
GLN B:192 B:192 47.0 0.261 E -141.9 138.5 47.0 0.261 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
2016-09-07 GLN A:193 A:192 40.0 0.222 E -129.3 150.8 40.0 0.222 0.0 HOH
3.536
O
O
GLN B:193 B:192 38.0 0.211 E -135.3 152.1 38.0 0.211 0.0 HOH
3.672
O
O
4nqq 1 P10287 88.26 4e-132 X-RAY
2014-09-24 GLN A:192 A:192 38.0 0.211 E -131.1 136.9 38.0 0.211 0.0 CU
HOH
8.523
8.265
OE1
OE1
CU
O
GLN B:192 B:192 40.0 0.222 E -132.4 136.2 40.0 0.222 0.0 CU
HOH
7.912
7.821
HE21
HE22
CU
O
GLN C:192 C:192 35.0 0.194 E -129.9 139.5 NA NA NA
GLN D:192 D:192 36.0 0.2 E -131.8 137.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 GLN A:299 A:299 38.0 0.211 E -125.3 132.9