Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68714935 . C A CCDS10868.1:NM_001793.4:c.932aCg>aAg_NP_001784.2:p.311T>K Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 THR A:205 A:204 70.0 0.5 E -131.1 143.6 70.0 0.5 0.0
THR B:205 B:204 70.0 0.5 E -131.1 142.9 70.0 0.5 0.0
THR C:205 C:204 77.0 0.55 E -132.0 143.0 NA NA NA
THR D:205 D:204 70.0 0.5 E -132.7 142.6 NA NA NA
THR E:205 E:204 69.0 0.493 E -131.3 141.8 NA NA NA
THR F:205 F:204 71.0 0.507 E -131.6 142.4 NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 THR A:204 A:204 83.0 0.593 E -129.2 139.3 83.0 0.593 0.0 GOL
HOH
 8.329
6.424
 OG1
N
 C1
O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 THR A:206 I:311 85.0 0.607 E -117.8 141.2 85.0 0.607 0.0 HOH
 2.656
 O
 O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 THR D:206 I:311 74.0 0.529 E -119.2 145.1 NA NA NA
THR E:206 J:311 80.0 0.571 E -120.7 138.0 80.0 0.571 0.0 HOH
 7.218
 N
 O
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 THR A:205 A:204 75.0 0.536 E -125.9 162.2 75.0 0.536 0.0 HOH
 3.034
 OG1
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 THR A:205 A:204 82.0 0.586 E -125.5 153.4 82.0 0.586 0.0 HOH
 6.449
 N
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 THR A:205 A:204 77.0 0.55 E -128.1 147.4 77.0 0.55 0.0 1PE
HOH
 8.674
3.623
 OG1
O
 OH3
O
THR B:205 B:204 73.0 0.521 E -129.6 139.1 73.0 0.521 0.0 1PE
HOH
 9.745
2.781
 OG1
O
 OH2
O
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 THR A:205 A:204 73.0 0.521 E -135.3 145.6 73.0 0.521 0.0 G60
HOH
 6.481
8.248
 OG1
OG1
 CL
O
THR B:205 B:204 76.0 0.543 E -132.1 140.6 76.0 0.543 0.0 G60
HOH
 4.430
8.145
 OG1
OG1
 H62
O
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 THR A:204 A:204 75.0 0.536 E -128.4 156.6 75.0 0.536 0.0 HOH
 2.617
 O
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 THR A:204 A:204 72.0 0.514 E -124.2 147.1 72.0 0.514 0.0 HOH
 4.548
 O
 O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 THR A:204 A:204 77.0 0.55 E -114.6 139.7 77.0 0.55 0.0 HOH
 8.359
 N
 O
THR C:204 C:204 72.0 0.514 E -120.0 140.3 72.0 0.514 0.0 HOH
 4.695
 O
 O
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 THR A:204 A:204 71.0 0.507 E -137.7 148.3 71.0 0.507 0.0 HOH
 4.078
 N
 O
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 THR A:205 A:204 77.0 0.55 E -126.3 157.1 77.0 0.55 0.0 HOH
 2.707
 O
 O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 THR A:204 A:204 78.0 0.557 E -123.9 144.7 78.0 0.557 0.0 HOH
 8.247
 O
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 THR A:205 A:204 67.0 0.479 E -129.0 143.0 67.0 0.479 0.0 HOH
 3.524
 N
 O
THR B:205 B:204 79.0 0.564 E -124.6 142.0 79.0 0.564 0.0 HOH
 3.954
 N
 O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 THR A:204 A:204 80.0 0.571 E -132.6 143.4 80.0 0.571 0.0
THR B:204 B:204 73.0 0.521 E -129.7 136.6 73.0 0.521 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 THR A:205 A:204 72.0 0.514 E -139.5 140.1 72.0 0.514 0.0 HOH
 3.615
 N
 O
THR B:205 B:204 71.0 0.507 E -134.4 145.7 71.0 0.507 0.0 HOH
 3.995
 N
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 THR A:204 A:204 76.0 0.543 E -139.1 151.3 76.0 0.543 0.0 CU
HOH
 7.002
6.783
 HG21
HG1
 CU
O
THR B:204 B:204 73.0 0.521 E -137.4 151.1 73.0 0.521 0.0 CU
HOH
 6.792
3.180
 HG21
O
 CU
O
THR C:204 C:204 78.0 0.557 E -140.2 150.9 NA NA NA
THR D:204 D:204 82.0 0.586 E -140.0 150.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 THR A:311 A:311 85.0 0.607 E -133.2 147.9