Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 68714955 . A C CCDS10868.1:NM_001793.4:c.952Atc>Ctc_NP_001784.2:p.318I>L Homo sapiens cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zmt 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 ILE A:212 A:211 0.0 0.0 E -102.6 124.4 0.0 0.0 0.0
ILE B:212 B:211 0.0 0.0 E -103.9 124.1 0.0 0.0 0.0
ILE C:212 C:211 0.0 0.0 E -103.7 123.1 NA NA NA
ILE D:212 D:211 0.0 0.0 E -102.8 124.5 NA NA NA
ILE E:212 E:211 0.0 0.0 E -102.7 123.8 NA NA NA
ILE F:212 NA:NA DO NA DO DO DO NA NA NA
4zmn 1 P22223 100.0 1e-163 X-RAY
 2016-09-07 ILE A:211 A:211 0.0 0.0 E -85.9 111.5 0.0 0.0 0.0 HOH
 9.372
 CA
 O
6ztb 1 P22223 100.0 1e-151 X-RAY
 2021-05-05 ILE A:213 I:318 0.0 0.0 E -94.2 120.8 0.0 0.0 0.0 NA
NA
HOH
 9.226
7.183
3.967
 N
CG2
CG1
 NA
NA
O
6ztr 3 P22223 100.0 1e-151 X-RAY
 2021-05-05 ILE D:213 I:318 0.0 0.0 E -87.0 108.1 NA NA NA
ILE E:213 J:318 0.0 0.0 E -87.4 105.4 0.0 0.0 0.0
4zmz 1 P22223 100.0 1e-149 X-RAY
 2016-09-07 ILE A:212 A:211 2.0 0.011 E -91.3 114.1 2.0 0.011 0.0 HOH
 4.343
 CG1
 O
7cmf 1 P22223 100.0 1e-149 X-RAY
 2021-09-15 ILE A:212 A:211 0.0 0.0 E -98.4 121.8 0.0 0.0 0.0 HOH
 7.415
 N
 O
4zmq 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 ILE A:212 A:211 0.0 0.0 E -95.9 115.0 0.0 0.0 0.0 CA
HOH
 7.367
4.036
 O
CG1
 CA
O
ILE B:212 B:211 0.0 0.0 E -92.0 119.5 0.0 0.0 0.0
7cme 1 P22223 100.0 9e-149 X-RAY
 2021-09-15 ILE A:212 A:211 0.0 0.0 E -100.7 118.9 0.0 0.0 0.0 HOH
 3.906
 CG1
 O
ILE B:212 B:211 0.0 0.0 E -100.4 124.9 0.0 0.0 0.0
4oy9 1 P22223 100.0 9e-149 X-RAY
 2015-04-01 ILE A:211 A:211 3.0 0.017 E -97.6 109.1 3.0 0.017 0.0 HOH
 2.588
 O
 O
4zml 1 P22223 100.0 9e-149 X-RAY
 2016-09-07 ILE A:211 A:211 0.0 0.0 E -94.8 118.6 0.0 0.0 0.0 CA
HOH
 9.057
3.840
 CG2
CG1
 CA
O
5jym 1 P22223 100.0 9e-149 X-RAY
 2016-12-28 ILE A:211 A:211 3.0 0.017 E -97.2 130.1 3.0 0.017 0.0 HOH
 8.619
 CA
 O
ILE C:211 C:211 1.0 0.006 E -97.6 128.1 1.0 0.006 0.0
4zmo 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 ILE A:211 A:211 0.0 0.0 E -99.4 112.7 0.0 0.0 0.0
4zmy 1 P22223 99.53 4e-148 X-RAY
 2016-09-07 ILE A:212 A:211 5.0 0.029 E -94.9 111.6 5.0 0.029 0.0 CA
CA
CA
HOH
 8.345
8.882
9.501
2.486
 CG2
O
CG2
O
 CA
CA
CA
O
4zmp 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 ILE A:211 A:211 0.0 0.0 E -92.4 115.7 0.0 0.0 0.0 HOH
 4.128
 CG1
 O
4zmw 1 P22223 99.53 2e-147 X-RAY
 2016-09-07 ILE A:212 A:211 0.0 0.0 E -88.9 128.5 0.0 0.0 0.0 HOH
 9.147
 N
 O
ILE B:212 B:211 0.0 0.0 E -87.3 113.3 0.0 0.0 0.0 HOH
 6.903
 N
 O
4zmx 1 P22223 99.53 3e-147 X-RAY
 2016-09-07 ILE A:211 A:211 0.0 0.0 E -93.0 112.5 0.0 0.0 0.0
ILE B:211 B:211 0.0 0.0 E -100.6 133.5 0.0 0.0 0.0
4zmv 1 P22223 98.59 5e-146 X-RAY
 2016-09-07 ILE A:212 A:211 0.0 0.0 E -100.1 130.1 0.0 0.0 0.0 HOH
 3.682
 CG1
 O
ILE B:212 B:211 0.0 0.0 E -96.9 132.1 0.0 0.0 0.0 HOH
 4.216
 CG1
 O
4nqq 1 P10287 88.26 4e-132 X-RAY
 2014-09-24 ILE A:211 A:211 0.0 0.0 E -95.7 143.7 0.0 0.0 0.0 CA
HOH
 7.853
8.680
 HG22
HG22
 CA
O
ILE B:211 B:211 0.0 0.0 E -94.4 146.4 0.0 0.0 0.0
ILE C:211 C:211 0.0 0.0 E -98.4 142.5 NA NA NA
ILE D:211 D:211 43.0 0.246 -96.2 360.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p22223-f1 1 P22223 100.0 0.0 ILE A:318 A:318 6.0 0.034 E -92.3 122.6