Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87436663 . A C CCDS10960.1:NM_022818.4:c.338tAt>tCt_NP_073729.1:p.113Y>S Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 TYR A:113 B:113 1.0 0.004 E -113.3 141.7 1.0 0.004 0.0 HOH
 5.307
 CE2
 O
TYR C:113 A:113 0.0 0.0 E -114.7 142.4 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 TYR A:118 A:113 0.0 0.0 E -122.2 144.5 0.0 0.0 0.0 HOH
 2.987
 OH
 O
TYR C:118 C:113 0.0 0.0 E -121.3 153.1 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 TYR A:118 A:113 1.0 0.004 E -105.2 151.5 1.0 0.004 0.0 HOH
 2.775
 OH
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 TYR A:123 A:113 3.0 0.013 E -111.5 144.6 3.0 0.013 0.0 HOH
 3.027
 HE2
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 TYR A:113 A:113 2.0 0.009 E -105.6 141.6 2.0 0.009 0.0 GOL
HOH
 7.767
6.780
 CA
N
 O1
O
TYR B:113 B:113 1.0 0.004 E -114.6 146.3 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 TYR A:113 A:113 1.0 0.004 E -117.9 158.4 1.0 0.004 0.0 HOH
 6.747
 N
 O
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 TYR A:113 A:113 3.0 0.013 E -112.7 152.8 3.0 0.013 0.0 GOL
HOH
 7.769
5.120
 CA
CE2
 O1
O
TYR B:113 B:113 0.0 0.0 E -121.4 153.6 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 TYR A:113 A:113 4.0 0.017 E -127.8 148.5 4.0 0.017 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 TYR A:113 A:113 4.0 0.017 E -118.7 150.0 4.0 0.017 0.0 SO4
HOH
 8.395
2.815
 OH
OH
 O2
O
TYR B:113 B:113 3.0 0.013 E -114.9 145.2 NA NA NA
TYR C:113 C:113 3.0 0.013 E -104.5 151.6 NA NA NA
TYR D:113 D:113 0.0 0.0 E -109.6 150.0 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 TYR B:118 B:113 1.0 0.004 E -113.9 152.0 1.0 0.004 0.0 HOH
 3.138
 OH
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 TYR B:118 B:113 2.0 0.009 E -121.5 149.9 2.0 0.009 0.0 HOH
 3.139
 OH
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 TYR A:112 A:113 1.0 0.004 E -113.5 143.9 1.0 0.004 0.0 HOH
 4.905
 OH
 O
TYR B:112 B:113 2.0 0.009 E -112.0 143.8 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 TYR A:114 A:113 0.0 0.0 E -103.2 152.4 0.0 0.0 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 TYR A:123 A:113 1.0 0.004 E -109.5 149.1 1.0 0.004 0.0 HOH
 3.423
 OH
 O
TYR B:123 B:113 0.0 0.0 E -120.0 149.6 0.0 0.0 0.0 HOH
 3.506
 OH
 O
TYR C:123 C:113 4.0 0.017 E -109.2 144.4 4.0 0.017 0.0 HOH
 4.751
 OH
 O
TYR D:123 D:113 3.0 0.013 E -111.0 146.3 3.0 0.013 0.0 HOH
 3.495
 OH
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 TYR A:135 A:111 2.0 0.009 E -114.3 150.3 2.0 0.009 0.0 HOH
 4.678
 OH
 O
TYR B:135 B:111 1.0 0.004 E -113.4 151.5 1.0 0.004 0.0 HOH
 3.490
 OH
 O
TYR C:135 C:111 2.0 0.009 E -110.3 152.9 2.0 0.009 0.0 HOH
 6.553
 OH
 O
TYR D:135 D:111 2.0 0.009 E -113.9 150.3 2.0 0.009 0.0 HOH
 3.309
 OH
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 TYR A:118 A:113 1.0 0.004 E -127.2 152.9 1.0 0.004 0.0 HOH
 3.443
 OH
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 TYR B:118 B:113 1.0 0.004 E -117.4 147.5 1.0 0.004 0.0 HOH
 2.785
 OH
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 TYR B:118 B:113 2.0 0.009 E -125.6 152.4 2.0 0.009 0.0 HOH
 9.499
 CA
 O
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 TYR A:126 A:1113 3.0 0.013 E -111.9 147.5 3.0 0.013 0.0 HOH
 2.919
 OH
 O
TYR B:126 B:1113 1.0 0.004 E -108.9 149.6 1.0 0.004 0.0 HOH
 2.950
 OH
 O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 TYR A:143 A:128 1.0 0.004 E -111.6 147.9 1.0 0.004 0.0 HOH
 3.381
 OH
 O
TYR B:143 B:128 0.0 0.0 E -128.0 140.1 NA NA NA
TYR C:143 C:128 0.0 0.0 E -129.7 151.5 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 TYR A:128 A:129 3.0 0.013 E -119.7 156.4 3.0 0.013 0.0
TYR B:128 B:129 1.0 0.004 E -118.2 137.9 NA NA NA
TYR C:128 C:129 1.0 0.004 E -128.4 149.9 NA NA NA
TYR D:128 D:129 2.0 0.009 E -111.5 152.3 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 TYR A:128 A:140 1.0 0.004 E -117.5 149.1 1.0 0.004 0.0 HOH
 3.012
 OH
 O
TYR B:128 B:140 1.0 0.004 E -114.9 146.8 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 TYR A:128 A:128 0.0 0.0 E -112.7 160.0 0.0 0.0 0.0 HOH
 3.337
 OH
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 TYR A:128 A:129 0.0 0.0 E -102.4 144.3 0.0 0.0 0.0 HOH
 4.788
 OH
 O
TYR B:128 B:129 1.0 0.004 E -108.2 145.1 1.0 0.004 0.0 HOH
 5.142
 OH
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 TYR A:120 A:113 1.0 0.004 E -115.6 148.4 1.0 0.004 0.0 SO4
HOH
 6.879
2.912
 O
OH
 O3
O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 TYR A:117 A:117 0.0 0.0 E -112.4 153.5 0.0 0.0 0.0 SO4
HOH
 6.578
3.484
 OH
OH
 O1
O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 TYR A:117 A:117 0.0 0.0 E -114.3 151.9 0.0 0.0 0.0 HOH
 3.269
 OH
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 TYR A:131 A:113 1.0 0.004 E -112.0 150.7 1.0 0.004 0.0 HOH
 3.190
 OH
 O
TYR B:131 B:113 4.0 0.017 E -112.1 150.4 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 TYR A:131 A:113 2.0 0.009 E -113.3 146.8 2.0 0.009 0.0 HOH
 2.637
 OH
 O
TYR B:131 B:113 3.0 0.013 E -115.2 149.9 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 TYR A:113 A:113 1.0 0.004 E -125.0 156.8 1.0 0.004 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 TYR B:110 C:113 4.0 0.017 E -116.7 140.7 4.0 0.017 0.0
TYR C:110 D:113 3.0 0.013 E -117.0 138.6 3.0 0.013 0.0
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 TYR A:115 A:113 2.0 0.009 E -117.9 148.1 2.0 0.009 0.0 JO4
HOH
 8.901
5.411
 CD2
OH
 C11
O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 TYR A:115 A:113 2.0 0.009 E -118.3 149.3 2.0 0.009 0.0 HOH
 4.897
 OH
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 TYR A:115 A:113 3.0 0.013 E -113.7 149.7 3.0 0.013 0.0 HOH
 3.408
 OH
 O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 TYR A:113 A:113 3.0 0.013 E -118.7 148.3 3.0 0.013 0.0 HOH
 2.553
 OH
 O
TYR B:113 B:113 2.0 0.009 E -115.9 149.5 NA NA NA
TYR C:113 C:113 3.0 0.013 E -112.3 142.9 3.0 0.013 0.0 HOH
 2.731
 OH
 O
TYR D:113 D:113 2.0 0.009 E -112.7 142.5 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 TYR A:114 A:113 3.0 0.013 E -107.6 142.0 3.0 0.013 0.0
TYR B:114 B:113 4.0 0.017 E -115.9 159.1 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 TYR A:117 A:117 2.0 0.009 E -115.7 151.8 2.0 0.009 0.0 HOH
 6.252
 O
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 TYR A:128 A:124 1.0 0.004 E -122.4 147.9 1.0 0.004 0.0 HOH
 6.494
 H
 O
TYR B:128 B:124 0.0 0.0 E -123.5 147.2 NA NA NA
TYR C:128 C:124 0.0 0.0 E -123.8 146.4 NA NA NA
TYR D:128 D:124 1.0 0.004 E -123.4 148.0 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 TYR A:128 A:129 0.0 0.0 E -111.4 149.3 0.0 0.0 0.0 HOH
 3.669
 OH
 O
TYR B:128 B:129 1.0 0.004 E -120.0 156.4 1.0 0.004 0.0 HOH
 2.833
 OH
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 TYR A:125 A:113 0.0 0.0 E -116.1 149.7 0.0 0.0 0.0 HOH
 3.330
 OH
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 TYR A:113 A:117 2.0 0.009 E -114.3 150.3 2.0 0.009 0.0 NOV
HOH
 9.480
3.053
 CE2
OH
 C24
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 TYR A:113 A:113 1.0 0.004 E -105.9 140.7
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 CYS A:113 A:113 3.0 0.022 E -89.0 127.4
af-q9h492-f1 1 Q9H492 82.5 1e-72 TYR A:113 A:113 2.0 0.009 E -113.2 142.1