Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 31439369 . G A CCDS10712.1:NM_005205.3:c.177ttC>ttT_NP_005196.1:p.59F>F Homo sapiens cytochrome c oxidase subunit 6A2 (COX6A2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2y69 7 P07471 80.41 3e-52 X-RAY
 2011-02-23 PHE G:59 G:47 59.0 0.281 -73.5 132.7 NA NA NA
PHE T:59 T:47 57.0 0.271 -69.9 133.6 57.0 0.271 0.0 HOH
 2.879
 O
 O
7o37 19 P43023 81.18 4e-47 EM
 2021-10-13 PHE CA:47 g:47 69.0 0.329 -87.7 115.6 69.0 0.329 0.0
7o3c 19 P43023 81.18 4e-47 EM
 2021-10-13 PHE CA:47 g:47 54.0 0.257 -71.6 98.0 54.0 0.257 0.0
7o3e 17 P43023 81.18 4e-47 EM
 2021-10-13 PHE W:47 g:47 56.0 0.267 -88.0 132.1 56.0 0.267 0.0
5j4z 68 W5PI52 83.13 3e-46 EM
 2016-09-21 PHE EC:47 BG:47 59.0 NA -73.7 161.5 59.0 NA NA
5j7y 68 W5PI52 83.13 3e-46 EM
 2016-09-21 PHE EC:47 BG:47 60.0 NA -73.7 161.6 60.0 NA NA
1v54 7 P07471 81.18 2e-45 X-RAY
 2003-12-23 PHE G:47 G:47 58.0 0.276 -81.2 131.6 58.0 0.276 0.0 HOH
 2.833
 N
 O
PHE T:47 T:47 58.0 0.276 -81.2 135.6 58.0 0.276 0.0 HOH
 2.900
 N
 O
1v55 7 P07471 81.18 2e-45 X-RAY
 2003-12-23 PHE G:47 G:47 58.0 0.276 -83.2 131.4 58.0 0.276 0.0 HOH
 2.994
 N
 O
PHE T:47 T:47 56.0 0.267 -82.7 132.3 56.0 0.267 0.0 HOH
 2.770
 O
 O
2dyr 7 P07471 81.18 2e-45 X-RAY
 2007-04-03 PHE G:47 G:47 60.0 0.286 -82.7 130.5 60.0 0.286 0.0 HOH
 2.913
 N
 O
PHE T:47 T:47 56.0 0.267 -82.9 134.7 56.0 0.267 0.0 HOH
 2.744
 N
 O
2dys 7 P07471 81.18 2e-45 X-RAY
 2007-04-03 PHE G:47 G:47 56.0 0.267 -81.7 132.0 56.0 0.267 0.0 HOH
 3.805
 CB
 O
PHE T:47 T:47 55.0 0.262 -82.3 132.9 55.0 0.262 0.0 HOH
 2.965
 N
 O
2eij 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 PHE G:47 G:47 58.0 0.276 -83.2 130.8 58.0 0.276 0.0 HOH
 3.008
 O
 O
PHE T:47 T:47 58.0 0.276 -82.3 131.2 58.0 0.276 0.0 HOH
 2.811
 N
 O
2eik 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 PHE G:47 G:47 55.0 0.262 -74.5 134.9 55.0 0.262 0.0 HOH
 2.952
 O
 O
PHE T:47 T:47 56.0 0.267 -73.9 136.5 56.0 0.267 0.0 HOH
 2.768
 N
 O
2eil 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 PHE G:47 G:47 55.0 0.262 -79.0 136.8 55.0 0.262 0.0 HOH
 2.876
 O
 O
PHE T:47 T:47 53.0 0.252 -79.0 138.8 53.0 0.252 0.0 HOH
 2.832
 N
 O
2eim 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 PHE G:47 G:47 58.0 0.276 -70.9 147.7 58.0 0.276 0.0 HOH
 3.468
 CA
 O
PHE T:47 T:47 50.0 0.238 -71.3 147.6 50.0 0.238 0.0 HOH
 3.733
 CB
 O
2ein 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 PHE G:47 G:47 58.0 0.276 -69.9 138.4 58.0 0.276 0.0 ZN
HOH
 9.688
3.658
 CZ
CB
 ZN
O
PHE T:47 T:47 53.0 0.252 -71.4 139.1 53.0 0.252 0.0 ZN
HOH
 9.205
3.766
 CE1
CB
 ZN
O
2zxw 7 P07471 81.18 2e-45 X-RAY
 2009-02-24 PHE G:47 G:47 60.0 0.286 -71.0 129.6 60.0 0.286 0.0 HOH
 3.701
 CB
 O
PHE T:47 T:47 57.0 0.271 -73.6 137.4 NA NA NA
3abk 7 P07471 81.18 2e-45 X-RAY
 2010-03-09 PHE G:47 G:47 55.0 0.262 -65.9 132.7 55.0 0.262 0.0 HOH
 3.010
 N
 O
PHE T:47 T:47 58.0 0.276 -71.8 133.8 NA NA NA
3abl 7 P07471 81.18 2e-45 X-RAY
 2010-01-19 PHE G:47 G:47 56.0 0.267 -74.2 127.7 56.0 0.267 0.0 HOH
 2.965
 O
 O
PHE T:47 T:47 58.0 0.276 -83.2 134.1 NA NA NA
3abm 7 P07471 81.18 2e-45 X-RAY
 2010-01-19 PHE G:47 G:47 56.0 0.267 -75.5 131.2 56.0 0.267 0.0 HOH
 3.491
 CD1
 O
PHE T:47 T:47 58.0 0.276 -79.6 138.9 NA NA NA
3ag1 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 PHE G:47 G:47 55.0 0.262 -77.3 124.3 55.0 0.262 0.0 HOH
 3.672
 CB
 O
PHE T:47 T:47 61.0 0.29 -86.7 128.5 NA NA NA
3ag2 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 PHE G:47 G:47 58.0 0.276 -76.0 133.5 58.0 0.276 0.0 EDO
EDO
HOH
 4.449
3.627
3.128
 CZ
CA
O
 O1
O2
O
PHE T:47 T:47 57.0 0.271 -72.6 130.9 NA NA NA
3ag3 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 PHE G:47 G:47 59.0 0.281 -80.8 134.2 59.0 0.281 0.0 HOH
 3.199
 O
 O
PHE T:47 T:47 58.0 0.276 -82.6 131.8 NA NA NA
3ag4 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 PHE G:47 G:47 54.0 0.257 -78.3 129.8 54.0 0.257 0.0 HOH
 3.093
 O
 O
PHE T:47 T:47 56.0 0.267 -64.2 134.1 NA NA NA
3asn 7 P07471 81.18 2e-45 X-RAY
 2011-08-03 PHE G:47 G:47 60.0 0.286 -82.0 132.6 60.0 0.286 0.0 HOH
 2.898
 N
 O
PHE T:47 T:47 56.0 0.267 -75.0 134.7 NA NA NA
3aso 7 P07471 81.18 2e-45 X-RAY
 2011-08-03 PHE G:47 G:47 59.0 0.281 -80.1 128.5 59.0 0.281 0.0 HOH
 2.974
 N
 O
PHE T:47 T:47 57.0 0.271 -73.3 132.5 NA NA NA
3wg7 7 P07471 81.18 2e-45 X-RAY
 2014-04-30 PHE G:47 G:47 56.0 0.267 -84.0 126.7 56.0 0.267 0.0 HOH
 2.916
 O
 O
PHE T:47 T:47 56.0 0.267 -68.2 134.7 NA NA NA
3x2q 7 P07471 81.18 2e-45 X-RAY
 2015-06-10 PHE G:47 G:47 56.0 0.267 -70.0 131.7 56.0 0.267 0.0 HOH
 3.668
 CB
 O
PHE T:47 T:47 59.0 0.281 -72.9 131.6 NA NA NA
5b1a 7 P07471 81.18 2e-45 X-RAY
 2016-09-14 PHE G:47 G:47 56.0 0.267 -80.1 136.6 56.0 0.267 0.0 HOH
 2.687
 O
 O
PHE T:47 T:47 58.0 0.276 -73.4 137.3 NA NA NA
5b1b 7 P07471 81.18 2e-45 X-RAY
 2016-09-14 PHE G:47 G:47 55.0 0.262 -76.2 137.4 55.0 0.262 0.0 HOH
 2.637
 O
 O
PHE T:47 T:47 59.0 0.281 -74.1 138.4 NA NA NA
5b3s 7 P07471 81.18 2e-45 X-RAY
 2017-03-22 PHE G:47 G:47 57.0 0.271 -74.5 132.1 57.0 0.271 0.0 EDO
HOH
 3.644
2.740
 CD1
O
 O2
O
PHE T:47 T:47 57.0 0.271 -71.6 130.4 NA NA NA
5w97 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 PHE G:47 G:47 62.0 0.295 -83.4 114.6 62.0 0.295 0.0 HOH
 3.613
 CA
 O
PHE T:47 g:47 58.0 0.276 -78.9 120.5 58.0 0.276 0.0 HOH
 3.453
 CA
 O
5wau 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 PHE G:47 G:47 61.0 0.29 -77.0 129.0 61.0 0.29 0.0 HOH
 2.710
 O
 O
PHE T:47 g:47 60.0 0.286 -77.7 130.9 60.0 0.286 0.0 HOH
 3.671
 CB
 O
5x19 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 PHE G:47 G:47 59.0 0.281 -89.4 124.4 59.0 0.281 0.0 EDO
HOH
 3.396
2.795
 CA
N
 O2
O
PHE T:47 T:47 61.0 0.29 -84.6 127.0 NA NA NA
5x1b 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 PHE G:47 G:47 60.0 0.286 -99.2 125.3 60.0 0.286 0.0 EDO
HOH
 3.183
3.825
 CA
CD2
 O2
O
PHE T:47 T:47 63.0 0.3 -73.1 129.6 NA NA NA
5x1f 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 PHE G:47 G:47 64.0 0.305 -83.7 122.6 64.0 0.305 0.0 EDO
HOH
 3.459
3.878
 CA
CB
 O2
O
PHE T:47 T:47 60.0 0.286 -73.9 128.8 NA NA NA
5xdq 7 P07471 81.18 2e-45 X-RAY
 2017-07-12 PHE G:47 G:47 59.0 0.281 -81.0 128.1 59.0 0.281 0.0 EDO
HOH
 3.664
2.854
 CA
N
 O1
O
PHE T:47 T:47 61.0 0.29 -79.9 130.5 NA NA NA
5xdx 7 P07471 81.18 2e-45 X-RAY
 2018-02-07 PHE G:47 G:47 59.0 0.281 -77.9 126.8 59.0 0.281 0.0 HOH
 3.019
 N
 O
PHE T:47 T:47 59.0 0.281 -78.2 129.4 NA NA NA
5z84 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 PHE G:47 G:47 58.0 0.276 -79.1 131.1 58.0 0.276 0.0 EDO
HOH
 3.695
2.721
 CD1
N
 O2
O
PHE T:47 T:47 57.0 0.271 -73.8 134.5 NA NA NA
5z85 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 PHE G:47 G:47 57.0 0.271 -74.4 130.7 57.0 0.271 0.0 EDO
HOH
 3.672
3.607
 CA
CB
 O2
O
PHE T:47 T:47 58.0 0.276 -73.3 133.1 NA NA NA
5z86 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 PHE G:47 G:47 59.0 0.281 -76.3 132.7 59.0 0.281 0.0 EDO
HOH
 3.675
3.656
 CA
CB
 O2
O
PHE T:47 T:47 57.0 0.271 -75.0 133.0 NA NA NA
5zco 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 PHE G:47 G:47 58.0 0.276 -78.8 132.2 58.0 0.276 0.0 EDO
HOH
 3.676
2.759
 CA
N
 O2
O
PHE T:47 T:47 57.0 0.271 -70.4 131.9 NA NA NA
5zcp 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 PHE G:47 G:47 57.0 0.271 -78.2 132.1 57.0 0.271 0.0 EDO
HOH
 3.642
2.806
 CD1
N
 O2
O
PHE T:47 T:47 57.0 0.271 -70.6 131.5 NA NA NA
5zcq 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 PHE G:47 G:47 57.0 0.271 -75.4 135.5 57.0 0.271 0.0 EDO
HOH
 3.637
2.796
 CD1
O
 O2
O
PHE T:47 T:47 56.0 0.267 -73.8 137.3 NA NA NA
6j8m 7 P07471 81.18 2e-45 X-RAY
 2019-06-26 PHE G:47 G:47 57.0 0.271 -75.9 127.2 57.0 0.271 0.0 HOH
 2.677
 O
 O
PHE T:47 T:47 56.0 0.267 -72.5 128.1 NA NA NA
6jy3 7 P07471 81.18 2e-45 X-RAY
 2019-09-18 PHE G:47 G:47 58.0 0.276 -89.7 134.9 58.0 0.276 0.0 HOH
 3.550
 CA
 O
6jy4 7 P07471 81.18 2e-45 X-RAY
 2019-09-18 PHE G:47 G:47 55.0 0.262 -94.2 136.1 55.0 0.262 0.0 HOH
 3.542
 CA
 O
6nkn 7 P07471 81.18 2e-45 X-RAY
 2019-03-20 PHE G:47 G:47 60.0 0.286 -86.0 110.9 60.0 0.286 0.0 HOH
 2.795
 N
 O
PHE T:47 T:47 60.0 0.286 -77.9 130.1 60.0 0.286 0.0 HOH
 6.988
 CD1
 O
6nmf 7 P07471 81.18 2e-45 X-RAY
 2019-03-13 PHE G:47 G:47 59.0 0.281 -76.3 106.7 59.0 0.281 0.0 HOH
 4.737
 CA
 O
PHE T:47 T:47 63.0 0.3 -74.8 121.3 63.0 0.3 0.0 HOH
 7.749
 N
 O
6nmp 7 P07471 81.18 2e-45 X-RAY
 2019-03-13 PHE G:47 G:47 60.0 0.286 -75.5 110.2 60.0 0.286 0.0 HOH
 6.920
 CZ
 O
PHE T:47 T:47 61.0 0.29 -58.9 133.4 61.0 0.29 0.0 HOH
 6.051
 CZ
 O
7coh 7 P07471 81.18 2e-45 X-RAY
 2021-04-07 PHE G:47 G:47 57.0 0.271 -69.4 131.1 57.0 0.271 0.0 EDO
HOH
 3.581
3.368
 CA
N
 O2
O
PHE T:47 T:47 58.0 0.276 -71.8 132.0 NA NA NA
7ev7 7 P07471 81.18 2e-45 X-RAY
 2021-07-14 PHE G:47 G:47 58.0 0.276 -79.6 133.0 58.0 0.276 0.0 EDO
HOH
 3.663
2.623
 CD1
O
 O2
O
PHE T:47 T:47 57.0 0.271 -76.8 134.3 NA NA NA
1occ 7 P07471 81.93 8e-45 X-RAY
 1996-12-07 PHE G:47 G:47 61.0 0.29 -82.5 130.7 61.0 0.29 0.0
PHE T:47 T:47 61.0 0.29 -82.5 130.6 61.0 0.29 0.0
1oco 7 P07471 81.93 8e-45 X-RAY
 1999-07-22 PHE G:47 G:47 55.0 0.262 -91.8 114.6 55.0 0.262 0.0
PHE T:47 T:47 56.0 0.267 -92.8 115.1 56.0 0.267 0.0
1ocr 7 P07471 81.93 8e-45 X-RAY
 1999-07-29 PHE G:47 G:47 62.0 0.295 -83.4 124.6 62.0 0.295 0.0
PHE T:47 T:47 64.0 0.305 -83.1 125.3 64.0 0.305 0.0
1ocz 7 P07471 81.93 8e-45 X-RAY
 1999-07-22 PHE G:47 G:47 63.0 0.3 -78.4 126.2 63.0 0.3 0.0
PHE T:47 T:47 62.0 0.295 -77.9 124.7 62.0 0.295 0.0
2occ 7 P07471 81.93 8e-45 X-RAY
 1999-01-13 PHE G:47 G:47 59.0 0.281 -81.1 116.5 59.0 0.281 0.0
PHE T:47 T:47 59.0 0.281 -79.8 115.8 NA NA NA
2ybb 26 P07471 81.93 8e-45 EM
 2011-10-19 PHE Z:47 R:47 62.0 0.295 -82.5 130.6 62.0 0.295 0.0
5gpn 40 P07471 81.93 8e-45 EM
 2017-04-05 PHE AB:47 4:47 75.0 NA -82.3 130.6 75.0 NA NA
5gup 66 ? 81.93 8e-45 EM
 2017-03-29 PHE AC:47 Aq:47 60.0 0.286 -82.4 130.6 60.0 0.286 0.0
5iy5 7 P07471 81.93 8e-45 X-RAY
 2017-01-11 PHE G:47 G:47 63.0 0.3 -78.0 130.7 63.0 0.3 0.0 EDO
HOH
 3.670
2.774
 CA
N
 O2
O
PHE T:47 T:47 57.0 0.271 -83.6 133.8 NA NA NA
5luf 18 P07471 81.93 8e-45 EM
 2016-11-30 PHE CA:47 4:47 61.0 0.29 -82.5 130.7 61.0 0.29 0.0
5xth 51 P07471 81.93 8e-45 EM
 2017-09-13 PHE ZA:47 3:47 59.0 0.281 -82.4 130.8 59.0 0.281 0.0
5xti 51 P07471 81.93 8e-45 EM
 2017-09-13 PHE ZA:47 3:47 62.0 0.295 -82.4 130.7 62.0 0.295 0.0
PHE BE:47 B3:47 61.0 0.29 -82.5 130.8 61.0 0.29 0.0
6juw 7 P07471 81.93 8e-45 X-RAY
 2020-03-25 PHE G:47 G:47 57.0 0.271 -76.0 131.0 57.0 0.271 0.0 EDO
HOH
 3.602
2.946
 CA
N
 O2
O
PHE T:47 T:47 54.0 0.257 -71.3 133.0 54.0 0.257 0.0 EDO
HOH
 3.625
3.127
 CA
N
 O2
O
7cp5 7 P07471 81.93 8e-45 X-RAY
 2021-07-21 PHE G:47 G:47 59.0 0.281 -81.0 132.3 59.0 0.281 0.0 EDO
HOH
 3.719
2.619
 CA
O
 O1
O
PHE T:47 T:47 57.0 0.271 -75.4 130.9 57.0 0.271 0.0 EDO
EDO
HOH
 3.635
4.454
2.950
 CA
CZ
O
 O1
O1
O
7d5w 7 P07471 81.93 8e-45 X-RAY
 2021-07-21 PHE G:47 G:47 59.0 0.281 -83.5 132.4 59.0 0.281 0.0 EDO
HOH
 3.600
2.610
 CD1
O
 O1
O
PHE T:47 T:47 58.0 0.276 -79.6 133.3 58.0 0.276 0.0 EDO
EDO
HOH
 3.576
4.361
2.930
 CA
CZ
O
 O1
O1
O
7d5x 7 P07471 81.93 8e-45 X-RAY
 2021-07-21 PHE G:47 G:47 59.0 0.281 -81.0 129.3 59.0 0.281 0.0 EDO
HOH
 3.647
2.595
 CD1
O
 O2
O
PHE T:47 T:47 57.0 0.271 -78.6 132.9 57.0 0.271 0.0 EDO
EDO
HOH
 4.268
3.623
2.921
 CZ
CA
O
 O1
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02221-f1 1 Q02221 100.0 1e-67 PHE A:59 A:59 50.0 0.238 -71.1 123.3