Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 58756156 . A C CCDS10801.1:NM_002080.2:c.273aaT>aaG_NP_002071.2:p.91N>K Homo sapiens glutamic-oxaloacetic transaminase 2 (GOT2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ax8 1 P00505 99.75 0.0 X-RAY
 2016-03-16 ASN A:62 A:91 147.0 0.919 T 48.6 52.2 113.0 0.706 0.213 C:P00505:0.212
ASN B:62 B:91 68.0 0.425 -130.0 150.1 NA NA NA
ASN C:62 C:91 150.0 0.938 53.7 66.9 113.0 0.706 0.232 A:P00505:0.231
ASN D:62 D:91 137.0 0.856 T 45.3 66.0 NA NA NA
3hlm 1 P05202 95.26 0.0 X-RAY
 2010-06-02 ASN A:62 A:91 153.0 0.956 T 45.4 43.4 117.0 0.731 0.225 B:P05202:0.225
 HOH
 3.304
 N
 O
ASN B:62 B:91 144.0 0.9 T 55.1 47.0 108.0 0.675 0.225 A:P05202:0.225
 HOH
 2.865
 CB
 O
ASN C:62 C:91 147.0 0.919 T 47.1 43.5 NA NA NA
ASN D:62 D:91 136.0 0.85 T 67.0 18.5 NA NA NA
3pd6 1 P05202 95.26 0.0 X-RAY
 2010-11-10 ASN A:62 A:91 154.0 0.963 T 48.8 52.7 123.0 0.769 0.194 B:P05202:0.194
 HOH
 3.124
 OD1
 O
ASN C:62 C:91 144.0 0.9 T 52.3 58.0 NA NA NA
3pd6 2 P05202 95.26 0.0 X-RAY
 2010-11-10 ASN B:62 B:91 145.0 0.906 T 51.2 50.6 111.0 0.694 0.212 A:P05202:0.212
 HOH
 3.039
 O
 O
ASN D:62 D:91 150.0 0.938 T 52.7 49.1 NA NA NA
3pdb 1 P05202 95.26 0.0 X-RAY
 2010-11-10 ASN A:62 A:91 152.0 0.95 T 50.0 54.2 122.0 0.762 0.188 B:P05202:0.188
 GOL
HOH
 2.985
3.285
 OD1
OD1
 O2
O
ASN C:62 C:91 146.0 0.912 T 58.6 58.5 NA NA NA
3pdb 2 P05202 95.26 0.0 X-RAY
 2010-11-10 ASN B:62 B:91 140.0 0.875 T 50.6 55.4 107.0 0.669 0.206 A:P05202:0.206
 HOH
 3.085
 O
 O
ASN D:62 D:91 149.0 0.931 T 49.4 52.5 NA NA NA
1ama 1 P00508 86.28 0.0 X-RAY
 1993-10-31 LYS A:62 A:64 182.0 0.91 T 57.1 47.9 138.0 0.69 0.22 A:P00508:0.22
 HOH
 3.661
 O
 O
1ivr 1 P00508 86.28 0.0 X-RAY
 1997-07-23 LYS A:62 A:62 185.0 0.925 T 60.1 57.1 138.0 0.69 0.235 A:P00508:0.235
 HOH
 3.019
 O
 O
1map 1 P00508 86.28 0.0 X-RAY
 1994-01-31 LYS A:62 A:64 174.0 0.87 T 52.8 49.5 132.0 0.66 0.21 A:P00508:0.21
 HOH
 2.760
 O
 O
1maq 1 P00508 86.28 0.0 X-RAY
 1994-01-31 LYS A:62 A:64 173.0 0.865 T 55.6 50.9 123.0 0.615 0.25 A:P00508:0.25
 HOH
 3.362
 O
 O
1oxo 1 P00508 86.28 0.0 X-RAY
 1996-06-10 LYS A:62 A:64 173.0 0.865 T 50.1 49.0 125.0 0.625 0.24 B:P00508:0.24
 HOH
 2.814
 NZ
 O
LYS B:62 B:64 176.0 0.88 T 57.5 62.7 143.0 0.715 0.165 A:P00508:0.165
 HOH
 2.077
 NZ
 O
1oxp 1 P00508 86.28 0.0 X-RAY
 1996-06-10 LYS A:62 A:64 184.0 0.92 T 67.5 51.8 140.0 0.7 0.22 A:P00508:0.22
 HOH
 5.092
 O
 O
1tar 1 P00508 86.28 0.0 X-RAY
 1994-01-31 LYS A:62 A:64 189.0 0.945 T 53.3 53.5 141.0 0.705 0.24 B:P00508:0.24
 HOH
 5.547
 C
 O
LYS B:62 B:64 181.0 0.905 T 59.3 40.2 141.0 0.705 0.2 A:P00508:0.2
 HOH
 4.816
 NZ
 O
1tas 1 P00508 86.28 0.0 X-RAY
 1994-01-31 LYS A:62 A:64 181.0 0.905 T 54.7 58.4 147.0 0.735 0.17 B:P00508:0.17
LYS B:62 B:64 183.0 0.915 T 45.7 61.9 143.0 0.715 0.2 A:P00508:0.2
1tat 1 P00508 86.28 0.0 X-RAY
 1994-01-31 LYS A:62 A:64 187.0 0.935 T 53.4 52.1 160.0 0.8 0.135 B:P00508:0.135
LYS B:62 B:64 178.0 0.89 T 50.1 52.7 145.0 0.725 0.165 A:P00508:0.165
7aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 LYS A:62 A:64 178.0 0.89 T 45.0 58.2 133.0 0.665 0.225 B:P00508:0.225
 HOH
 2.626
 CD
 O
LYS B:62 B:64 178.0 0.89 T 53.5 61.3 143.0 0.715 0.175 A:P00508:0.175
 HOH
 3.535
 CA
 O
8aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 LYS A:62 A:64 182.0 0.91 T 47.4 59.6 137.0 0.685 0.225 B:P00508:0.225
 HOH
 3.037
 O
 O
LYS B:62 B:64 186.0 0.93 T 54.8 61.5 140.0 0.7 0.23 A:P00508:0.23
 HOH
 3.281
 CA
 O
9aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 LYS A:62 A:64 183.0 0.915 T 43.8 59.2 136.0 0.68 0.235 B:P00508:0.235
 HOH
 3.748
 CA
 O
LYS B:62 B:64 180.0 0.9 T 51.6 58.3 144.0 0.72 0.18 A:P00508:0.18
 HOH
 3.582
 CA
 O
1aka 1 P00508 86.03 0.0 X-RAY
 1994-07-31 LYS A:62 A:64 184.0 0.92 T 54.7 54.4 140.0 0.7 0.22 B:P00508:0.22
 HOH
 3.101
 CD
 O
LYS B:62 B:64 179.0 0.895 T 58.5 58.6 139.0 0.695 0.2 A:P00508:0.2
 HOH
 3.603
 CA
 O
1akb 1 P00508 86.03 0.0 X-RAY
 1994-07-31 LYS A:62 A:64 184.0 0.92 T 52.5 54.8 144.0 0.72 0.2 A:P00508:0.2
 HOH
 2.833
 O
 O
1akc 1 P00508 86.03 0.0 X-RAY
 1994-07-31 LYS A:62 A:64 180.0 0.9 T 53.2 55.1 132.0 0.66 0.24 A:P00508:0.24
 HOH
 4.235
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p00505-f1 1 P00505 100.0 0.0 ASN A:91 A:91 152.0 0.95 T 47.0 44.4