Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 58757663 . G A CCDS10801.1:NM_002080.2:c.233cCt>cTt_NP_002071.2:p.78P>L Homo sapiens glutamic-oxaloacetic transaminase 2 (GOT2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ax8 1 P00505 99.75 0.0 X-RAY
 2016-03-16 PRO A:49 A:78 48.0 0.331 H -59.1 -37.6 48.0 0.331 0.0
PRO B:49 B:78 44.0 0.303 H -54.5 -27.2 NA NA NA
PRO C:49 C:78 49.0 0.338 H -53.8 -27.5 49.0 0.338 0.0
PRO D:49 D:78 54.0 0.372 H -55.2 -30.3 NA NA NA
3hlm 1 P05202 95.26 0.0 X-RAY
 2010-06-02 PRO A:49 A:78 60.0 0.414 H -57.5 -39.5 60.0 0.414 0.0 GOL
HOH
 7.069
5.893
 CD
CA
 C2
O
PRO B:49 B:78 62.0 0.428 H -59.4 -33.3 62.0 0.428 0.0 GOL
HOH
 7.206
6.275
 CD
N
 O2
O
PRO C:49 C:78 65.0 0.448 H -74.6 -30.3 NA NA NA
PRO D:49 D:78 63.0 0.434 H -79.5 -28.8 NA NA NA
3pd6 1 P05202 95.26 0.0 X-RAY
 2010-11-10 PRO A:49 A:78 55.0 0.379 H -50.4 -31.1 55.0 0.379 0.0 GOL
HOH
 6.480
3.391
 CD
CG
 O3
O
PRO C:49 C:78 61.0 0.421 H -45.7 -51.0 NA NA NA
3pd6 2 P05202 95.26 0.0 X-RAY
 2010-11-10 PRO B:49 B:78 60.0 0.414 H -59.4 -29.8 60.0 0.414 0.0 GOL
HOH
 7.234
2.860
 CD
O
 C2
O
PRO D:49 D:78 55.0 0.379 H -64.2 -25.3 NA NA NA
3pdb 1 P05202 95.26 0.0 X-RAY
 2010-11-10 PRO A:49 A:78 55.0 0.379 H -60.9 -28.3 55.0 0.379 0.0 BME
HOH
 6.842
3.357
 CD
CB
 O1
O
PRO C:49 C:78 60.0 0.414 H -59.1 -31.6 NA NA NA
3pdb 2 P05202 95.26 0.0 X-RAY
 2010-11-10 PRO B:49 B:78 61.0 0.421 H -62.0 -29.6 61.0 0.421 0.0 GOL
BME
HOH
 7.128
6.052
3.587
 N
CD
O
 O3
O1
O
PRO D:49 D:78 58.0 0.4 H -55.7 -28.8 NA NA NA
1ama 1 P00508 86.28 0.0 X-RAY
 1993-10-31 ASN A:49 A:51 79.0 0.494 H -54.1 -47.6 79.0 0.494 0.0 HOH
 2.872
 OD1
 O
1ivr 1 P00508 86.28 0.0 X-RAY
 1997-07-23 ASN A:49 A:49 77.0 0.481 H -52.5 -46.0 77.0 0.481 0.0 HOH
 3.119
 OD1
 O
1map 1 P00508 86.28 0.0 X-RAY
 1994-01-31 ASN A:49 A:51 87.0 0.544 H -55.8 -42.5 87.0 0.544 0.0 HOH
 2.837
 OD1
 O
1maq 1 P00508 86.28 0.0 X-RAY
 1994-01-31 ASN A:49 A:51 86.0 0.537 H -55.0 -50.2 86.0 0.537 0.0 HOH
 3.181
 OD1
 O
1oxo 1 P00508 86.28 0.0 X-RAY
 1996-06-10 ASN A:49 A:51 88.0 0.55 H -68.1 -40.4 88.0 0.55 0.0 HOH
 2.718
 OD1
 O
ASN B:49 B:51 92.0 0.575 H -67.5 -40.1 92.0 0.575 0.0 HOH
 3.253
 CB
 O
1oxp 1 P00508 86.28 0.0 X-RAY
 1996-06-10 ASN A:49 A:51 83.0 0.519 H -54.6 -51.1 83.0 0.519 0.0 HOH
 3.026
 O
 O
1tar 1 P00508 86.28 0.0 X-RAY
 1994-01-31 ASN A:49 A:51 94.0 0.588 H -67.6 -34.0 94.0 0.588 0.0 HOH
 6.151
 N
 O
ASN B:49 B:51 92.0 0.575 H -69.6 -46.6 92.0 0.575 0.0 HOH
 6.370
 N
 O
1tas 1 P00508 86.28 0.0 X-RAY
 1994-01-31 ASN A:49 A:51 78.0 0.487 H -56.0 -44.7 78.0 0.487 0.0
ASN B:49 B:51 77.0 0.481 H -75.3 -26.9 77.0 0.481 0.0
1tat 1 P00508 86.28 0.0 X-RAY
 1994-01-31 ASN A:49 A:51 83.0 0.519 H -66.6 -40.2 83.0 0.519 0.0
ASN B:49 B:51 77.0 0.481 H -71.2 -42.2 77.0 0.481 0.0
7aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 ASN A:49 A:51 92.0 0.575 H -63.5 -39.1 92.0 0.575 0.0 HOH
 3.140
 CB
 O
ASN B:49 B:51 89.0 0.556 H -69.2 -39.4 89.0 0.556 0.0 HOH
 3.103
 OD1
 O
8aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 ASN A:49 A:51 88.0 0.55 H -61.9 -45.7 88.0 0.55 0.0 HOH
 4.068
 OD1
 O
ASN B:49 B:51 91.0 0.569 H -64.8 -40.4 91.0 0.569 0.0 HOH
 3.755
 OD1
 O
9aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 ASN A:49 A:51 90.0 0.562 H -58.4 -43.8 90.0 0.562 0.0 HOH
 2.785
 OD1
 O
ASN B:49 B:51 86.0 0.537 H -68.7 -39.3 86.0 0.537 0.0 HOH
 3.028
 OD1
 O
1aka 1 P00508 86.03 0.0 X-RAY
 1994-07-31 ASN A:49 A:51 92.0 0.575 H -63.9 -36.8 92.0 0.575 0.0 HOH
 3.012
 OD1
 O
ASN B:49 B:51 86.0 0.537 H -61.1 -42.9 86.0 0.537 0.0 HOH
 3.104
 OD1
 O
1akb 1 P00508 86.03 0.0 X-RAY
 1994-07-31 ASN A:49 A:51 82.0 0.512 H -57.0 -50.0 82.0 0.512 0.0 HOH
 2.457
 OD1
 O
1akc 1 P00508 86.03 0.0 X-RAY
 1994-07-31 ASN A:49 A:51 81.0 0.506 H -50.2 -46.0 81.0 0.506 0.0 HOH
 2.834
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p00505-f1 1 P00505 100.0 0.0 PRO A:78 A:78 53.0 0.366 H -58.4 -31.6