Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 58757670 . C A CCDS10801.1:NM_002080.2:c.226Gtt>Ttt_NP_002071.2:p.76V>F Homo sapiens glutamic-oxaloacetic transaminase 2 (GOT2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ax8 1 P00505 99.75 0.0 X-RAY
 2016-03-16 VAL A:47 A:76 69.0 0.445 -106.4 129.8 29.0 0.187 0.258 C:P00505:0.258
VAL B:47 B:76 71.0 0.458 -105.5 110.6 NA NA NA
VAL C:47 C:76 66.0 0.426 -104.2 110.0 26.0 0.168 0.258 A:P00505:0.258
VAL D:47 D:76 66.0 0.426 -106.1 112.4 NA NA NA
3hlm 1 P05202 95.26 0.0 X-RAY
 2010-06-02 VAL A:47 A:76 65.0 0.419 -84.9 117.6 30.0 0.194 0.225 B:P05202:0.226
 GOL
HOH
 7.588
3.383
 N
CA
 C3
O
VAL B:47 B:76 63.0 0.406 -75.7 133.0 29.0 0.187 0.219 A:P05202:0.219
 GOL
HOH
 7.722
3.408
 O
CA
 O2
O
VAL C:47 C:76 65.0 0.419 -68.7 115.9 NA NA NA
VAL D:47 D:76 65.0 0.419 -79.1 110.3 NA NA NA
3pd6 1 P05202 95.26 0.0 X-RAY
 2010-11-10 VAL A:47 A:76 60.0 0.387 -87.7 118.6 26.0 0.168 0.219 B:P05202:0.219
 GOL
HOH
 8.024
3.059
 O
N
 O2
O
VAL C:47 C:76 62.0 0.4 -97.5 125.1 NA NA NA
3pd6 2 P05202 95.26 0.0 X-RAY
 2010-11-10 VAL B:47 B:76 66.0 0.426 -98.1 119.3 29.0 0.187 0.239 A:P05202:0.239
 GOL
HOH
 7.902
3.379
 O
CA
 O2
O
VAL D:47 D:76 59.0 0.381 -74.7 115.1 NA NA NA
3pdb 1 P05202 95.26 0.0 X-RAY
 2010-11-10 VAL A:47 A:76 63.0 0.406 -91.6 115.0 30.0 0.194 0.212 B:P05202:0.213
 BME
HOH
 8.088
3.496
 N
CA
 S2
O
VAL C:47 C:76 65.0 0.419 -89.6 114.3 NA NA NA
3pdb 2 P05202 95.26 0.0 X-RAY
 2010-11-10 VAL B:47 B:76 66.0 0.426 -95.5 108.7 29.0 0.187 0.239 A:P05202:0.239
 GOL
BME
HOH
 2.967
8.043
3.485
 N
C
CG2
 O3
O1
O
VAL D:47 D:76 66.0 0.426 -86.0 126.3 NA NA NA
1ama 1 P00508 86.28 0.0 X-RAY
 1993-10-31 VAL A:47 A:49 58.0 0.374 -102.7 119.0 23.0 0.148 0.226 A:P00508:0.226
 HOH
 2.943
 N
 O
1ivr 1 P00508 86.28 0.0 X-RAY
 1997-07-23 VAL A:47 A:47 58.0 0.374 -101.6 109.0 21.0 0.135 0.239 A:P00508:0.239
 HOH
 3.055
 N
 O
1map 1 P00508 86.28 0.0 X-RAY
 1994-01-31 VAL A:47 A:49 54.0 0.348 -98.1 110.9 19.0 0.123 0.225 A:P00508:0.226
 HOH
 3.138
 CA
 O
1maq 1 P00508 86.28 0.0 X-RAY
 1994-01-31 VAL A:47 A:49 59.0 0.381 -101.1 115.5 19.0 0.123 0.258 A:P00508:0.258
 HOH
 3.270
 CA
 O
1oxo 1 P00508 86.28 0.0 X-RAY
 1996-06-10 VAL A:47 A:49 64.0 0.413 -91.2 123.1 28.0 0.181 0.232 B:P00508:0.232
 HOH
 2.534
 O
 O
VAL B:47 B:49 66.0 0.426 -89.9 122.1 28.0 0.181 0.245 A:P00508:0.245
 HOH
 2.633
 O
 O
1oxp 1 P00508 86.28 0.0 X-RAY
 1996-06-10 VAL A:47 A:49 59.0 0.381 -107.8 112.4 21.0 0.135 0.246 A:P00508:0.245
 HOH
 2.951
 N
 O
1tar 1 P00508 86.28 0.0 X-RAY
 1994-01-31 VAL A:47 A:49 62.0 0.4 -97.0 115.0 25.0 0.161 0.239 B:P00508:0.239
 HOH
 3.466
 CG1
 O
VAL B:47 B:49 66.0 0.426 -94.4 114.0 28.0 0.181 0.245 A:P00508:0.245
 HOH
 3.457
 CA
 O
1tas 1 P00508 86.28 0.0 X-RAY
 1994-01-31 VAL A:47 A:49 57.0 0.368 -99.4 115.9 27.0 0.174 0.194 B:P00508:0.194
VAL B:47 B:49 54.0 0.348 -109.9 104.8 21.0 0.135 0.213 A:P00508:0.213
1tat 1 P00508 86.28 0.0 X-RAY
 1994-01-31 VAL A:47 A:49 52.0 0.335 -92.8 117.9 21.0 0.135 0.2 B:P00508:0.2
VAL B:47 B:49 50.0 0.323 -98.3 110.7 22.0 0.142 0.181 A:P00508:0.181
7aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 VAL A:47 A:49 61.0 0.394 -97.2 120.0 26.0 0.168 0.226 B:P00508:0.226
 HOH
 2.620
 O
 O
VAL B:47 B:49 63.0 0.406 -96.2 120.9 27.0 0.174 0.232 A:P00508:0.232
 HOH
 2.506
 O
 O
8aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 VAL A:47 A:49 61.0 0.394 -99.4 119.2 26.0 0.168 0.226 B:P00508:0.226
 HOH
 2.944
 O
 O
VAL B:47 B:49 61.0 0.394 -95.7 123.5 25.0 0.161 0.233 A:P00508:0.232
 HOH
 2.679
 O
 O
9aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 VAL A:47 A:49 62.0 0.4 -97.2 123.9 25.0 0.161 0.239 B:P00508:0.239
 HOH
 3.085
 N
 O
VAL B:47 B:49 63.0 0.406 -92.6 125.8 26.0 0.168 0.238 A:P00508:0.239
 HOH
 2.381
 O
 O
1aka 1 P00508 86.03 0.0 X-RAY
 1994-07-31 VAL A:47 A:49 62.0 0.4 -94.5 125.9 24.0 0.155 0.245 B:P00508:0.245
 HOH
 2.939
 O
 O
VAL B:47 B:49 61.0 0.394 -97.3 127.6 28.0 0.181 0.213 A:P00508:0.213
 HOH
 2.709
 O
 O
1akb 1 P00508 86.03 0.0 X-RAY
 1994-07-31 VAL A:47 A:49 57.0 0.368 -100.3 116.1 21.0 0.135 0.233 A:P00508:0.232
 HOH
 3.139
 N
 O
1akc 1 P00508 86.03 0.0 X-RAY
 1994-07-31 VAL A:47 A:49 54.0 0.348 -105.3 116.8 19.0 0.123 0.225 A:P00508:0.226
 HOH
 3.020
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p00505-f1 1 P00505 100.0 0.0 VAL A:76 A:76 63.0 0.406 -95.5 121.6