Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 58757703 . C A CCDS10801.1:NM_002080.2:c.193Ggt>Tgt_NP_002071.2:p.65G>C Homo sapiens glutamic-oxaloacetic transaminase 2 (GOT2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ax8 1 P00505 99.75 0.0 X-RAY
 2016-03-16 GLY A:36 A:65 44.0 0.587 -94.9 2.8 32.0 0.427 0.16 C:P00505:0.16
GLY B:36 B:65 51.0 0.68 S -95.8 7.4 NA NA NA
GLY C:36 C:65 40.0 0.533 -94.9 8.5 28.0 0.373 0.16 A:P00505:0.16
GLY D:36 D:65 51.0 0.68 -96.2 3.2 NA NA NA
3hlm 1 P05202 95.26 0.0 X-RAY
 2010-06-02 GLY A:36 A:65 44.0 0.587 -113.6 38.0 34.0 0.453 0.134 B:P05202:0.133
 GOL
HOH
 4.619
3.178
 CA
O
 O1
O
GLY B:36 B:65 48.0 0.64 -82.9 8.7 37.0 0.493 0.147 A:P05202:0.147
 HOH
 3.281
 N
 O
GLY C:36 C:65 48.0 0.64 -100.7 16.0 NA NA NA
GLY D:36 D:65 46.0 0.613 S -85.2 -4.7 NA NA NA
3pd6 1 P05202 95.26 0.0 X-RAY
 2010-11-10 GLY A:36 A:65 43.0 0.573 -99.9 27.1 17.0 0.227 0.346 B:P05202:0.147
I:None:0.24
 PMP
KYN
HOH
 6.427
3.714
5.418
 O
O
O
 N4A
N
O
GLY C:36 C:65 38.0 0.507 -98.9 34.4 NA NA NA
3pd6 2 P05202 95.26 0.0 X-RAY
 2010-11-10 GLY B:36 B:65 41.0 0.547 -105.4 32.0 30.0 0.4 0.147 A:P05202:0.147
 GOL
HOH
 3.948
5.133
 O
O
 O3
O
GLY D:36 D:65 51.0 0.68 -83.0 10.5 NA NA NA
3pdb 1 P05202 95.26 0.0 X-RAY
 2010-11-10 GLY A:36 A:65 47.0 0.627 -102.2 32.4 35.0 0.467 0.16 B:P05202:0.16
 OAA
HOH
 3.641
5.114
 O
O
 O3
O
GLY C:36 C:65 52.0 0.693 S -86.6 -5.2 NA NA NA
3pdb 2 P05202 95.26 0.0 X-RAY
 2010-11-10 GLY B:36 B:65 42.0 0.56 -100.5 24.3 31.0 0.413 0.147 A:P05202:0.147
 BME
PMP
HOH
 2.997
5.620
5.373
 O
O
O
 O1
N4A
O
GLY D:36 D:65 42.0 0.56 -102.4 28.4 NA NA NA
1ama 1 P00508 86.28 0.0 X-RAY
 1993-10-31 GLY A:36 A:38 0.0 0.0 -73.1 73.0 0.0 0.0 0.0 PLA
HOH
 2.798
4.947
 N
N
 O
O
1ivr 1 P00508 86.28 0.0 X-RAY
 1997-07-23 GLY A:36 A:36 0.0 0.0 -68.1 68.5 0.0 0.0 0.0 CBA
HOH
 2.562
4.504
 N
C
 OT
O
1map 1 P00508 86.28 0.0 X-RAY
 1994-01-31 GLY A:36 A:38 0.0 0.0 -78.6 87.6 0.0 0.0 0.0 KET
HOH
 2.771
4.474
 N
C
 OXT
O
1maq 1 P00508 86.28 0.0 X-RAY
 1994-01-31 GLY A:36 A:38 0.0 0.0 -91.8 87.5 0.0 0.0 0.0 PGU
HOH
 3.025
4.682
 N
C
 OXT
O
1oxo 1 P00508 86.28 0.0 X-RAY
 1996-06-10 GLY A:36 A:38 42.0 0.56 -102.1 9.4 35.0 0.467 0.093 B:P00508:0.093
 IK2
HOH
 4.620
2.670
 O
O
 OX
O
GLY B:36 B:38 41.0 0.547 -95.7 8.7 33.0 0.44 0.107 A:P00508:0.107
 IK2
HOH
 4.604
2.750
 O
O
 OX
O
1oxp 1 P00508 86.28 0.0 X-RAY
 1996-06-10 GLY A:36 A:38 3.0 0.04 S -68.4 89.7 3.0 0.04 0.0 IK2
HOH
 4.514
3.632
 N
N
 OX
O
1tar 1 P00508 86.28 0.0 X-RAY
 1994-01-31 GLY A:36 A:38 45.0 0.6 -98.9 24.1 37.0 0.493 0.107 B:P00508:0.107
 PLP
HOH
 6.143
2.390
 O
O
 C4A
O
GLY B:36 B:38 46.0 0.613 -103.0 49.1 35.0 0.467 0.146 A:P00508:0.147
 PLP
HOH
 6.562
3.698
 O
N
 C4A
O
1tas 1 P00508 86.28 0.0 X-RAY
 1994-01-31 GLY A:36 A:38 0.0 0.0 -71.9 84.4 0.0 0.0 0.0 PLA
 2.962
 N
 O
GLY B:36 B:38 0.0 0.0 -75.8 73.5 0.0 0.0 0.0 PLA
 3.017
 N
 O
1tat 1 P00508 86.28 0.0 X-RAY
 1994-01-31 GLY A:36 A:38 7.0 0.093 -92.8 93.5 5.0 0.067 0.026 B:P00508:0.027
 PLP
 6.316
 O
 C4A
GLY B:36 B:38 3.0 0.04 -97.4 90.4 2.0 0.027 0.013 A:P00508:0.013
 PLP
 6.596
 O
 C4A
7aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 GLY A:36 A:38 44.0 0.587 -89.1 15.4 36.0 0.48 0.107 B:P00508:0.107
 PLP
HOH
 6.261
2.816
 O
O
 C4A
O
GLY B:36 B:38 43.0 0.573 -91.4 14.5 33.0 0.44 0.133 A:P00508:0.133
 PLP
HOH
 6.234
2.935
 O
O
 C4A
O
8aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 GLY A:36 A:38 45.0 0.6 -96.7 4.7 36.0 0.48 0.12 B:P00508:0.12
 PLP
HOH
 6.586
2.542
 O
O
 C4A
O
GLY B:36 B:38 44.0 0.587 -95.3 12.2 34.0 0.453 0.134 A:P00508:0.133
 PLP
HOH
 6.509
2.929
 O
O
 C4A
O
9aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 GLY A:36 A:38 40.0 0.533 -100.4 20.6 32.0 0.427 0.106 B:P00508:0.107
 PMP
HOH
 5.891
2.718
 O
O
 N4A
O
GLY B:36 B:38 38.0 0.507 -91.1 18.3 31.0 0.413 0.094 A:P00508:0.093
 PMP
HOH
 5.586
2.986
 O
O
 N4A
O
1aka 1 P00508 86.03 0.0 X-RAY
 1994-07-31 GLY A:36 A:38 44.0 0.587 -104.5 14.4 35.0 0.467 0.12 B:P00508:0.12
 PLP
HOH
 5.427
3.218
 O
O
 O4A
O
GLY B:36 B:38 43.0 0.573 -96.5 10.6 33.0 0.44 0.133 A:P00508:0.133
 PO4
HOH
 7.422
2.983
 O
O
 O1
O
1akb 1 P00508 86.03 0.0 X-RAY
 1994-07-31 GLY A:36 A:38 0.0 0.0 -83.1 88.5 0.0 0.0 0.0 PPD
HOH
 3.094
4.778
 N
N
 O
O
1akc 1 P00508 86.03 0.0 X-RAY
 1994-07-31 GLY A:36 A:38 5.0 0.067 -79.2 89.7 5.0 0.067 0.0 PPE
HOH
 2.776
4.672
 N
N
 OXT
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p00505-f1 1 P00505 100.0 0.0 GLY A:65 A:65 31.0 0.413 -86.9 28.9