Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 58757795 . G A CCDS10801.1:NM_002080.2:c.101aCc>aTc_NP_002071.2:p.34T>I Homo sapiens glutamic-oxaloacetic transaminase 2 (GOT2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5ax8 1 P00505 99.75 0.0 X-RAY
 2016-03-16 THR A:5 A:34 111.0 0.793 T -67.5 -11.7 94.0 0.671 0.122 C:P00505:0.121
THR B:5 B:34 124.0 0.886 T -68.7 -10.5 NA NA NA
THR C:5 C:34 113.0 0.807 T -74.0 -17.3 83.0 0.593 0.214 A:P00505:0.214
THR D:5 D:34 102.0 0.729 T -72.8 -17.4 NA NA NA
3hlm 1 P05202 95.26 0.0 X-RAY
 2010-06-02 THR A:5 A:34 108.0 0.771 T -52.1 -32.3 87.0 0.621 0.15 B:P05202:0.15
 HOH
 4.307
 CA
 O
THR B:5 B:34 89.0 0.636 T -49.6 -34.2 64.0 0.457 0.179 A:P05202:0.179
 HOH
 3.259
 CG2
 O
THR C:5 C:34 113.0 0.807 T -59.8 -36.0 NA NA NA
THR D:5 D:34 94.0 0.671 T -52.0 -27.3 NA NA NA
3pd6 1 P05202 95.26 0.0 X-RAY
 2010-11-10 THR A:5 A:34 108.0 0.771 T -59.4 -36.7 89.0 0.636 0.135 B:P05202:0.136
 GOL
HOH
 6.308
3.035
 OG1
O
 O1
O
THR C:5 C:34 104.0 0.743 T -56.2 -31.7 NA NA NA
3pd6 2 P05202 95.26 0.0 X-RAY
 2010-11-10 THR B:5 B:34 89.0 0.636 T -53.7 -40.2 64.0 0.457 0.179 A:P05202:0.179
 GOL
HOH
 7.006
3.212
 OG1
CA
 O3
O
THR D:5 D:34 90.0 0.643 T -39.6 -36.8 NA NA NA
3pdb 1 P05202 95.26 0.0 X-RAY
 2010-11-10 THR A:5 A:34 111.0 0.793 T -68.7 -26.0 92.0 0.657 0.136 B:P05202:0.136
 HOH
 3.620
 OG1
 O
THR C:5 C:34 102.0 0.729 T -38.5 -41.7 NA NA NA
3pdb 2 P05202 95.26 0.0 X-RAY
 2010-11-10 THR B:5 B:34 90.0 0.643 T -53.6 -33.7 65.0 0.464 0.179 A:P05202:0.179
 HOH
 3.203
 CA
 O
THR D:5 D:34 89.0 0.636 T -49.4 -35.9 NA NA NA
1ama 1 P00508 86.28 0.0 X-RAY
 1993-10-31 SER A:5 A:7 75.0 0.652 T -66.6 -24.1 52.0 0.452 0.2 A:P00508:0.2
 HOH
 2.597
 O
 O
1ivr 1 P00508 86.28 0.0 X-RAY
 1997-07-23 SER A:5 A:5 75.0 0.652 T -72.0 -31.2 54.0 0.47 0.182 A:P00508:0.183
 HOH
 2.964
 OG
 O
1map 1 P00508 86.28 0.0 X-RAY
 1994-01-31 SER A:5 A:7 83.0 0.722 T -70.2 -24.0 60.0 0.522 0.2 A:P00508:0.2
 HOH
 3.066
 O
 O
1maq 1 P00508 86.28 0.0 X-RAY
 1994-01-31 SER A:5 A:7 80.0 0.696 T -65.0 -26.8 58.0 0.504 0.192 A:P00508:0.191
 HOH
 3.019
 O
 O
1oxo 1 P00508 86.28 0.0 X-RAY
 1996-06-10 SER A:5 A:7 99.0 0.861 T -58.6 -33.3 73.0 0.635 0.226 B:P00508:0.226
 HOH
 2.625
 OG
 O
SER B:5 B:7 94.0 0.817 T -49.6 -37.6 65.0 0.565 0.252 A:P00508:0.252
 HOH
 2.693
 O
 O
1oxp 1 P00508 86.28 0.0 X-RAY
 1996-06-10 SER A:5 A:7 76.0 0.661 T -71.9 -26.6 55.0 0.478 0.183 A:P00508:0.183
 HOH
 2.605
 OG
 O
1tar 1 P00508 86.28 0.0 X-RAY
 1994-01-31 SER A:5 A:7 99.0 0.861 T -56.1 -31.6 76.0 0.661 0.2 B:P00508:0.2
 HOH
 7.282
 N
 O
SER B:5 B:7 98.0 0.852 T -54.1 -25.1 69.0 0.6 0.252 A:P00508:0.252
 HOH
 8.777
 N
 O
1tas 1 P00508 86.28 0.0 X-RAY
 1994-01-31 SER A:5 A:7 85.0 0.739 T -60.1 -37.3 62.0 0.539 0.2 B:P00508:0.2
SER B:5 B:7 80.0 0.696 T -67.9 -39.4 55.0 0.478 0.218 A:P00508:0.217
1tat 1 P00508 86.28 0.0 X-RAY
 1994-01-31 SER A:5 A:7 73.0 0.635 T -54.5 -16.3 41.0 0.357 0.278 B:P00508:0.278
SER B:5 B:7 77.0 0.67 T -59.3 -32.1 51.0 0.443 0.227 A:P00508:0.226
7aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 SER A:5 A:7 102.0 0.887 T -62.4 -29.2 78.0 0.678 0.209 B:P00508:0.209
 HOH
 3.086
 O
 O
SER B:5 B:7 96.0 0.835 T -58.5 -31.6 67.0 0.583 0.252 A:P00508:0.252
 HOH
 2.946
 O
 O
8aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 SER A:5 A:7 105.0 0.913 T -59.3 -24.2 79.0 0.687 0.226 B:P00508:0.226
 HOH
 3.222
 O
 O
SER B:5 B:7 78.0 0.678 T -50.8 -35.7 55.0 0.478 0.2 A:P00508:0.2
 HOH
 2.697
 O
 O
9aat 1 P00508 86.28 0.0 X-RAY
 1993-10-31 SER A:5 A:7 104.0 0.904 T -56.1 -26.0 77.0 0.67 0.234 B:P00508:0.235
 HOH
 3.374
 O
 O
SER B:5 B:7 98.0 0.852 T -48.2 -35.3 69.0 0.6 0.252 A:P00508:0.252
 HOH
 2.905
 O
 O
1aka 1 P00508 86.03 0.0 X-RAY
 1994-07-31 SER A:5 A:7 104.0 0.904 T -58.8 -31.3 77.0 0.67 0.234 B:P00508:0.235
 HOH
 2.765
 O
 O
SER B:5 B:7 92.0 0.8 T -59.6 -31.9 60.0 0.522 0.278 A:P00508:0.278
 HOH
 3.061
 O
 O
1akb 1 P00508 86.03 0.0 X-RAY
 1994-07-31 SER A:5 A:7 77.0 0.67 T -67.0 -27.4 52.0 0.452 0.218 A:P00508:0.217
 HOH
 3.060
 O
 O
1akc 1 P00508 86.03 0.0 X-RAY
 1994-07-31 SER A:5 A:7 75.0 0.652 S -67.0 -32.6 50.0 0.435 0.217 A:P00508:0.217
 HOH
 3.131
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p00505-f1 1 P00505 100.0 0.0 THR A:34 A:34 112.0 0.8 T -56.9 -28.1