Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87432438 . G A CCDS10960.1:NM_022818.4:c.58Gtc>Atc_NP_073729.1:p.20V>I Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 VAL A:20 B:20 11.0 0.071 H -65.0 -51.7 11.0 0.071 0.0 HOH
 4.037
 CG1
 O
VAL C:20 A:20 10.0 0.065 H -65.3 -46.7 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 VAL A:25 A:20 9.0 0.058 H -71.1 -41.7 9.0 0.058 0.0 HOH
 3.525
 CG1
 O
VAL C:25 C:20 10.0 0.065 H -73.3 -41.6 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 VAL A:25 A:20 9.0 0.058 H -66.8 -42.0 9.0 0.058 0.0 HOH
 3.952
 CB
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 VAL A:30 A:20 14.0 0.09 H -57.7 -53.4 14.0 0.09 0.0 HOH
 2.904
 HG12
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 VAL A:20 A:20 10.0 0.065 H -73.6 -46.4 10.0 0.065 0.0
VAL B:20 B:20 12.0 0.077 H -56.9 -46.3 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 VAL A:20 A:20 13.0 0.084 H -63.1 -46.0 13.0 0.084 0.0
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 VAL A:20 A:20 25.0 0.161 H -56.3 -43.5 25.0 0.161 0.0 HOH
 3.733
 CG1
 O
VAL B:20 B:20 13.0 0.084 H -64.3 -46.5 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 VAL A:20 A:20 15.0 0.097 H -61.2 -45.1 15.0 0.097 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 VAL A:20 A:20 19.0 0.123 H -62.1 -38.5 19.0 0.123 0.0 HOH
 3.049
 O
 O
VAL B:20 B:20 1.0 0.006 H -59.7 -41.2 NA NA NA
VAL C:20 C:20 2.0 0.013 H -64.3 -35.9 NA NA NA
VAL D:20 D:20 5.0 0.032 H -65.6 -41.6 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 VAL B:25 B:20 10.0 0.065 H -61.1 -45.1 10.0 0.065 0.0 HOH
 3.848
 CB
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 VAL B:25 B:20 12.0 0.077 H -69.5 -40.6 12.0 0.077 0.0 HOH
 3.939
 CB
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 VAL A:19 A:20 1.0 0.006 H -61.4 -42.4 1.0 0.006 0.0 HOH
 3.041
 O
 O
VAL B:19 B:20 3.0 0.019 H -59.9 -42.2 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 VAL A:21 A:20 6.0 0.039 H -70.0 -44.5 6.0 0.039 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 VAL A:30 A:20 6.0 0.039 H -68.5 -51.2 6.0 0.039 0.0 HOH
 3.680
 CG1
 O
VAL B:30 B:20 12.0 0.077 H -67.5 -45.4 12.0 0.077 0.0 HOH
 3.964
 CG1
 O
VAL C:30 C:20 10.0 0.065 H -64.7 -42.8 10.0 0.065 0.0 HOH
 3.963
 CG1
 O
VAL D:30 D:20 18.0 0.116 H -61.4 -40.1 18.0 0.116 0.0 HOH
 3.020
 O
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 VAL A:42 A:18 13.0 0.084 H -64.8 -44.8 13.0 0.084 0.0 HOH
 4.669
 N
 O
VAL B:42 B:18 12.0 0.077 H -66.4 -44.4 12.0 0.077 0.0 HOH
 4.711
 CG1
 O
VAL C:42 C:18 11.0 0.071 H -65.0 -46.1 11.0 0.071 0.0 HOH
 6.723
 CG1
 O
VAL D:42 D:18 14.0 0.09 H -63.3 -40.9 14.0 0.09 0.0 HOH
 4.354
 CG1
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 VAL A:25 A:20 2.0 0.013 H -61.6 -42.1 2.0 0.013 0.0 HOH
 3.195
 O
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 VAL B:25 B:20 10.0 0.065 H -66.4 -44.4 10.0 0.065 0.0 HOH
 3.819
 CB
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 VAL B:25 B:20 15.0 0.097 H -61.5 -45.8 15.0 0.097 0.0
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 VAL A:33 A:1020 2.0 0.013 H -62.4 -42.3 2.0 0.013 0.0 HOH
 3.644
 CG1
 O
VAL B:33 B:1020 1.0 0.006 H -61.3 -41.5 1.0 0.006 0.0 HOH
 3.623
 CG1
 O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 VAL A:50 A:35 13.0 0.084 H -72.2 -47.5 13.0 0.084 0.0 HOH
 5.437
 CG1
 O
VAL B:50 B:35 12.0 0.077 H -56.4 -56.8 NA NA NA
VAL C:50 C:35 10.0 0.065 H -58.5 -51.9 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 VAL A:35 A:36 11.0 0.071 H -54.2 -48.2 11.0 0.071 0.0
VAL B:35 B:36 12.0 0.077 H -63.5 -58.2 NA NA NA
VAL C:35 C:36 11.0 0.071 H -45.4 -50.9 NA NA NA
VAL D:35 D:36 14.0 0.09 H -59.9 -61.8 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 VAL A:35 A:47 11.0 0.071 H -66.5 -56.3 11.0 0.071 0.0 HOH
 6.908
 N
 O
VAL B:35 B:47 1.0 0.006 H -68.8 -54.6 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 VAL A:35 A:35 9.0 0.058 H -74.1 -40.8 9.0 0.058 0.0 HOH
 3.510
 CB
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 VAL A:35 A:36 2.0 0.013 H -65.5 -35.1 2.0 0.013 0.0 HOH
 4.236
 CB
 O
VAL B:35 B:36 3.0 0.019 H -69.8 -43.0 3.0 0.019 0.0 HOH
 3.952
 CG1
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 VAL A:27 A:20 13.0 0.084 H -60.0 -44.2 13.0 0.084 0.0 HOH
 3.687
 CB
 O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 VAL A:24 A:24 10.0 0.065 H -67.4 -39.1 10.0 0.065 0.0 SO4
HOH
 9.184
3.768
 N
CG1
 O3
O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 VAL A:24 A:24 8.0 0.052 H -65.3 -39.7 8.0 0.052 0.0 HOH
 4.362
 CG1
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 VAL A:38 A:20 2.0 0.013 H -64.8 -39.3 2.0 0.013 0.0 HOH
 3.649
 CG1
 O
VAL B:38 B:20 2.0 0.013 H -66.5 -39.0 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 VAL A:38 A:20 2.0 0.013 H -62.9 -42.3 2.0 0.013 0.0 HOH
 3.691
 CG1
 O
VAL B:38 B:20 3.0 0.019 H -62.7 -41.0 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 VAL A:20 A:20 6.0 0.039 H -60.9 -54.2 6.0 0.039 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 VAL B:17 C:20 12.0 0.077 H -59.7 -43.0 12.0 0.077 0.0
VAL C:17 D:20 12.0 0.077 H -59.6 -44.1 12.0 0.077 0.0
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 VAL A:22 A:20 3.0 0.019 H -64.2 -39.9 3.0 0.019 0.0 HOH
 3.169
 O
 O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 VAL A:22 A:20 2.0 0.013 H -61.9 -40.9 2.0 0.013 0.0 HOH
 2.949
 O
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 VAL A:22 A:20 1.0 0.006 H -60.9 -41.4 1.0 0.006 0.0 HOH
 3.080
 O
 O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 VAL A:20 A:20 10.0 0.065 H -61.6 -42.8 10.0 0.065 0.0 GOL
HOH
 3.181
6.118
 CG1
N
 O2
O
VAL B:20 B:20 10.0 0.065 H -63.1 -42.1 NA NA NA
VAL C:20 C:20 8.0 0.052 H -64.0 -44.1 8.0 0.052 0.0 HOH
 5.280
 O
 O
VAL D:20 D:20 12.0 0.077 H -62.9 -42.4 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 VAL A:21 A:20 20.0 0.129 H -55.1 -41.3 20.0 0.129 0.0
VAL B:21 B:20 15.0 0.097 H -73.0 -62.6 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 VAL A:24 A:24 1.0 0.006 H -62.1 -44.8 1.0 0.006 0.0 MLT
HOH
 9.616
3.006
 CG2
O
 O4
O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 VAL A:35 A:31 5.0 0.032 H -62.9 -36.5 5.0 0.032 0.0 HOH
 9.667
 HG21
 O
VAL B:35 B:31 9.0 0.058 H -64.1 -35.1 NA NA NA
VAL C:35 C:31 9.0 0.058 H -63.8 -35.5 NA NA NA
VAL D:35 D:31 7.0 0.045 H -64.6 -35.9 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 VAL A:35 A:36 15.0 0.097 H -59.7 -43.7 15.0 0.097 0.0 HOH
 2.984
 O
 O
VAL B:35 B:36 15.0 0.097 H -57.3 -44.5 15.0 0.097 0.0 HOH
 3.019
 O
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 VAL A:32 A:20 6.0 0.039 H -61.4 -46.3 6.0 0.039 0.0 HOH
 3.788
 CG1
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 VAL A:20 A:24 4.0 0.026 H -65.3 -39.5 4.0 0.026 0.0 NOV
HOH
 6.582
2.966
 N
O
 C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 VAL A:20 A:20 13.0 0.084 H -65.4 -46.6
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 VAL A:20 A:20 12.0 0.077 H -65.8 -46.6
af-q9h492-f1 1 Q9H492 82.5 1e-72 VAL A:20 A:20 10.0 0.065 H -61.1 -47.7