Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr16 | 87432438 | . | G | A | CCDS10960.1:NM_022818.4:c.58Gtc>Atc_NP_073729.1:p.20V>I | Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA. |
---|---|---|---|---|---|---|---|
|
|
|
|
PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5gmv | 1 | Q9GZQ8 | 100.0 | 1e-89 |
X-RAY |
2017-03-08 | VAL | A:20 | B:20 | 11.0 | 0.071 | H | -65.0 | -51.7 | 11.0 | 0.071 | 0.0 |
HOH |
4.037 |
CG1 |
O |
||
VAL | C:20 | A:20 | 10.0 | 0.065 | H | -65.3 | -46.7 | NA | NA | NA | |||||||||||||
2zjd | 1 | Q9GZQ8 | 100.0 | 1e-89 |
X-RAY |
2008-06-03 | VAL | A:25 | A:20 | 9.0 | 0.058 | H | -71.1 | -41.7 | 9.0 | 0.058 | 0.0 |
HOH |
3.525 |
CG1 |
O |
||
VAL | C:25 | C:20 | 10.0 | 0.065 | H | -73.3 | -41.6 | NA | NA | NA | |||||||||||||
5d94 | 1 | Q9GZQ8 | 100.0 | 1e-89 |
X-RAY |
2015-10-21 | VAL | A:25 | A:20 | 9.0 | 0.058 | H | -66.8 | -42.0 | 9.0 | 0.058 | 0.0 |
HOH |
3.952 |
CB |
O |
||
6lan | 1 | Q8IVM0,Q9GZQ8 | 99.2 | 1e-88 |
X-RAY |
2020-09-30 | VAL | A:30 | A:20 | 14.0 | 0.09 | H | -57.7 | -53.4 | 14.0 | 0.09 | 0.0 |
HOH |
2.904 |
HG12 |
O |
||
5wrd | 1 | Q9CQV6 | 95.2 | 2e-86 |
X-RAY |
2017-03-29 | VAL | A:20 | A:20 | 10.0 | 0.065 | H | -73.6 | -46.4 | 10.0 | 0.065 | 0.0 | ||||||
VAL | B:20 | B:20 | 12.0 | 0.077 | H | -56.9 | -46.3 | NA | NA | NA | |||||||||||||
5yiq | 1 | Q9CQV6 | 95.2 | 2e-86 |
X-RAY |
2018-05-23 | VAL | A:20 | A:20 | 13.0 | 0.084 | H | -63.1 | -46.0 | 13.0 | 0.084 | 0.0 | ||||||
5yis | 1 | Q9CQV6 | 95.2 | 2e-86 |
X-RAY |
2018-05-23 | VAL | A:20 | A:20 | 25.0 | 0.161 | H | -56.3 | -43.5 | 25.0 | 0.161 | 0.0 |
HOH |
3.733 |
CG1 |
O |
||
VAL | B:20 | B:20 | 13.0 | 0.084 | H | -64.3 | -46.5 | NA | NA | NA | |||||||||||||
2n9x | 1 | Q9GZQ8 | 100.0 | 3e-86 |
NMR |
2016-12-14 | VAL | A:20 | A:20 | 15.0 | 0.097 | H | -61.2 | -45.1 | 15.0 | 0.097 | 0.0 | ||||||
6j04 | 1 | Q9GZQ8 | 99.19 | 6e-86 |
X-RAY |
2019-11-06 | VAL | A:20 | A:20 | 19.0 | 0.123 | H | -62.1 | -38.5 | 19.0 | 0.123 | 0.0 |
HOH |
3.049 |
O |
O |
||
VAL | B:20 | B:20 | 1.0 | 0.006 | H | -59.7 | -41.2 | NA | NA | NA | |||||||||||||
VAL | C:20 | C:20 | 2.0 | 0.013 | H | -64.3 | -35.9 | NA | NA | NA | |||||||||||||
VAL | D:20 | D:20 | 5.0 | 0.032 | H | -65.6 | -41.6 | NA | NA | NA | |||||||||||||
2z0e | 2 | Q62625 | 95.97 | 6e-86 |
X-RAY |
2007-05-22 | VAL | B:25 | B:20 | 10.0 | 0.065 | H | -61.1 | -45.1 | 10.0 | 0.065 | 0.0 |
HOH |
3.848 |
CB |
O |
||
2zzp | 2 | Q62625 | 95.97 | 6e-86 |
X-RAY |
2009-03-03 | VAL | B:25 | B:20 | 12.0 | 0.077 | H | -69.5 | -40.6 | 12.0 | 0.077 | 0.0 |
HOH |
3.939 |
CB |
O |
||
5xad | 1 | Q9GZQ8 | 100.0 | 2e-85 |
X-RAY |
2017-07-12 | VAL | A:19 | A:20 | 1.0 | 0.006 | H | -61.4 | -42.4 | 1.0 | 0.006 | 0.0 |
HOH |
3.041 |
O |
O |
||
VAL | B:19 | B:20 | 3.0 | 0.019 | H | -59.9 | -42.2 | NA | NA | NA | |||||||||||||
2k6q | 1 | Q62625 | 98.33 | 3e-85 |
NMR |
2008-09-02 | VAL | A:21 | A:20 | 6.0 | 0.039 | H | -70.0 | -44.5 | 6.0 | 0.039 | 0.0 | ||||||
5xac | 1 | Q9GZQ8 | 100.0 | 4e-85 |
X-RAY |
2017-07-12 | VAL | A:30 | A:20 | 6.0 | 0.039 | H | -68.5 | -51.2 | 6.0 | 0.039 | 0.0 |
HOH |
3.680 |
CG1 |
O |
||
VAL | B:30 | B:20 | 12.0 | 0.077 | H | -67.5 | -45.4 | 12.0 | 0.077 | 0.0 |
HOH |
3.964 |
CG1 |
O |
|||||||||
VAL | C:30 | C:20 | 10.0 | 0.065 | H | -64.7 | -42.8 | 10.0 | 0.065 | 0.0 |
HOH |
3.963 |
CG1 |
O |
|||||||||
VAL | D:30 | D:20 | 18.0 | 0.116 | H | -61.4 | -40.1 | 18.0 | 0.116 | 0.0 |
HOH |
3.020 |
O |
O |
|||||||||
5xae | 1 | Q9GZQ8 | 100.0 | 4e-85 |
X-RAY |
2017-07-12 | VAL | A:42 | A:18 | 13.0 | 0.084 | H | -64.8 | -44.8 | 13.0 | 0.084 | 0.0 |
HOH |
4.669 |
N |
O |
||
VAL | B:42 | B:18 | 12.0 | 0.077 | H | -66.4 | -44.4 | 12.0 | 0.077 | 0.0 |
HOH |
4.711 |
CG1 |
O |
|||||||||
VAL | C:42 | C:18 | 11.0 | 0.071 | H | -65.0 | -46.1 | 11.0 | 0.071 | 0.0 |
HOH |
6.723 |
CG1 |
O |
|||||||||
VAL | D:42 | D:18 | 14.0 | 0.09 | H | -63.3 | -40.9 | 14.0 | 0.09 | 0.0 |
HOH |
4.354 |
CG1 |
O |
|||||||||
1ugm | 1 | Q62625 | 98.33 | 5e-85 |
X-RAY |
2004-07-06 | VAL | A:25 | A:20 | 2.0 | 0.013 | H | -61.6 | -42.1 | 2.0 | 0.013 | 0.0 |
HOH |
3.195 |
O |
O |
||
2z0d | 2 | Q62625 | 98.33 | 5e-85 |
X-RAY |
2007-05-22 | VAL | B:25 | B:20 | 10.0 | 0.065 | H | -66.4 | -44.4 | 10.0 | 0.065 | 0.0 |
HOH |
3.819 |
CB |
O |
||
5ms2 | 2 | Q9GZQ8 | 100.0 | 6e-85 |
X-RAY |
2017-04-19 | VAL | B:25 | B:20 | 15.0 | 0.097 | H | -61.5 | -45.8 | 15.0 | 0.097 | 0.0 | ||||||
5v4k | 1 | Q9GZQ8 | 100.0 | 2e-84 |
X-RAY |
2017-05-17 | VAL | A:33 | A:1020 | 2.0 | 0.013 | H | -62.4 | -42.3 | 2.0 | 0.013 | 0.0 |
HOH |
3.644 |
CG1 |
O |
||
VAL | B:33 | B:1020 | 1.0 | 0.006 | H | -61.3 | -41.5 | 1.0 | 0.006 | 0.0 |
HOH |
3.623 |
CG1 |
O |
|||||||||
3vtw | 1 | Q96CV9,Q9GZQ8 | 100.0 | 3e-84 |
X-RAY |
2013-06-26 | VAL | A:50 | A:35 | 13.0 | 0.084 | H | -72.2 | -47.5 | 13.0 | 0.084 | 0.0 |
HOH |
5.437 |
CG1 |
O |
||
VAL | B:50 | B:35 | 12.0 | 0.077 | H | -56.4 | -56.8 | NA | NA | NA | |||||||||||||
VAL | C:50 | C:35 | 10.0 | 0.065 | H | -58.5 | -51.9 | NA | NA | NA | |||||||||||||
3wao | 1 | O75143,Q9GZQ8 | 100.0 | 3e-84 |
X-RAY |
2013-12-25 | VAL | A:35 | A:36 | 11.0 | 0.071 | H | -54.2 | -48.2 | 11.0 | 0.071 | 0.0 | ||||||
VAL | B:35 | B:36 | 12.0 | 0.077 | H | -63.5 | -58.2 | NA | NA | NA | |||||||||||||
VAL | C:35 | C:36 | 11.0 | 0.071 | H | -45.4 | -50.9 | NA | NA | NA | |||||||||||||
VAL | D:35 | D:36 | 14.0 | 0.09 | H | -59.9 | -61.8 | NA | NA | NA | |||||||||||||
3x0w | 1 | Q9GZQ8 | 100.0 | 5e-84 |
X-RAY |
2015-01-14 | VAL | A:35 | A:47 | 11.0 | 0.071 | H | -66.5 | -56.3 | 11.0 | 0.071 | 0.0 |
HOH |
6.908 |
N |
O |
||
VAL | B:35 | B:47 | 1.0 | 0.006 | H | -68.8 | -54.6 | NA | NA | NA | |||||||||||||
3vtv | 1 | Q96CV9,Q9GZQ8 | 100.0 | 5e-84 |
X-RAY |
2013-06-26 | VAL | A:35 | A:35 | 9.0 | 0.058 | H | -74.1 | -40.8 | 9.0 | 0.058 | 0.0 |
HOH |
3.510 |
CB |
O |
||
4waa | 1 | Q9GZQ8 | 100.0 | 6e-84 |
X-RAY |
2015-09-09 | VAL | A:35 | A:36 | 2.0 | 0.013 | H | -65.5 | -35.1 | 2.0 | 0.013 | 0.0 |
HOH |
4.236 |
CB |
O |
||
VAL | B:35 | B:36 | 3.0 | 0.019 | H | -69.8 | -43.0 | 3.0 | 0.019 | 0.0 |
HOH |
3.952 |
CG1 |
O |
|||||||||
5dcn | 1 | Q9GZQ8 | 100.0 | 6e-84 |
X-RAY |
2016-03-09 | VAL | A:27 | A:20 | 13.0 | 0.084 | H | -60.0 | -44.2 | 13.0 | 0.084 | 0.0 |
HOH |
3.687 |
CB |
O |
||
3vtu | 1 | Q9GZQ8 | 99.16 | 7e-84 |
X-RAY |
2013-06-26 | VAL | A:24 | A:24 | 10.0 | 0.065 | H | -67.4 | -39.1 | 10.0 | 0.065 | 0.0 |
SO4 HOH |
9.184 3.768 |
N CG1 |
O3 O |
||
7elg | 1 | Q9GZQ8 | 99.16 | 7e-84 |
X-RAY |
2021-10-13 | VAL | A:24 | A:24 | 8.0 | 0.052 | H | -65.3 | -39.7 | 8.0 | 0.052 | 0.0 |
HOH |
4.362 |
CG1 |
O |
||
5ms5 | 1 | Q5ZUV9,Q9GZQ8 | 100.0 | 9e-84 |
X-RAY |
2017-04-19 | VAL | A:38 | A:20 | 2.0 | 0.013 | H | -64.8 | -39.3 | 2.0 | 0.013 | 0.0 |
HOH |
3.649 |
CG1 |
O |
||
VAL | B:38 | B:20 | 2.0 | 0.013 | H | -66.5 | -39.0 | NA | NA | NA | |||||||||||||
5ms6 | 1 | Q9GZQ8 | 100.0 | 9e-84 |
X-RAY |
2017-04-19 | VAL | A:38 | A:20 | 2.0 | 0.013 | H | -62.9 | -42.3 | 2.0 | 0.013 | 0.0 |
HOH |
3.691 |
CG1 |
O |
||
VAL | B:38 | B:20 | 3.0 | 0.019 | H | -62.7 | -41.0 | NA | NA | NA | |||||||||||||
2lue | 1 | Q9GZQ8 | 100.0 | 7e-82 |
NMR |
2013-07-17 | VAL | A:20 | A:20 | 6.0 | 0.039 | H | -60.9 | -54.2 | 6.0 | 0.039 | 0.0 | ||||||
5w9a | 2 | Q9GZQ8 | 100.0 | 7e-81 |
X-RAY |
2018-10-10 | VAL | B:17 | C:20 | 12.0 | 0.077 | H | -59.7 | -43.0 | 12.0 | 0.077 | 0.0 | ||||||
VAL | C:17 | D:20 | 12.0 | 0.077 | H | -59.6 | -44.1 | 12.0 | 0.077 | 0.0 | |||||||||||||
7r9w | 1 | Q9H492 | 82.5 | 3e-72 |
X-RAY |
2022-01-12 | VAL | A:22 | A:20 | 3.0 | 0.019 | H | -64.2 | -39.9 | 3.0 | 0.019 | 0.0 |
HOH |
3.169 |
O |
O |
||
7r9z | 1 | Q9H492 | 82.5 | 3e-72 |
X-RAY |
2022-01-12 | VAL | A:22 | A:20 | 2.0 | 0.013 | H | -61.9 | -40.9 | 2.0 | 0.013 | 0.0 |
HOH |
2.949 |
O |
O |
||
7ra0 | 1 | Q9H492 | 82.5 | 3e-72 |
X-RAY |
2022-01-12 | VAL | A:22 | A:20 | 1.0 | 0.006 | H | -60.9 | -41.4 | 1.0 | 0.006 | 0.0 |
HOH |
3.080 |
O |
O |
||
5cx3 | 1 | Q9H492 | 82.5 | 4e-72 |
X-RAY |
2016-08-03 | VAL | A:20 | A:20 | 10.0 | 0.065 | H | -61.6 | -42.8 | 10.0 | 0.065 | 0.0 |
GOL HOH |
3.181 6.118 |
CG1 N |
O2 O |
||
VAL | B:20 | B:20 | 10.0 | 0.065 | H | -63.1 | -42.1 | NA | NA | NA | |||||||||||||
VAL | C:20 | C:20 | 8.0 | 0.052 | H | -64.0 | -44.1 | 8.0 | 0.052 | 0.0 |
HOH |
5.280 |
O |
O |
|||||||||
VAL | D:20 | D:20 | 12.0 | 0.077 | H | -62.9 | -42.4 | NA | NA | NA | |||||||||||||
3eci | 1 | Q9H492 | 82.5 | 5e-72 |
X-RAY |
2008-10-14 | VAL | A:21 | A:20 | 20.0 | 0.129 | H | -55.1 | -41.3 | 20.0 | 0.129 | 0.0 | ||||||
VAL | B:21 | B:20 | 15.0 | 0.097 | H | -73.0 | -62.6 | NA | NA | NA | |||||||||||||
3wal | 1 | Q9H492 | 80.99 | 4e-71 |
X-RAY |
2013-12-25 | VAL | A:24 | A:24 | 1.0 | 0.006 | H | -62.1 | -44.8 | 1.0 | 0.006 | 0.0 |
MLT HOH |
9.616 3.006 |
CG2 O |
O4 O |
||
5dpr | 1 | Q9Y4G2,Q9H492 | 81.67 | 5e-71 |
X-RAY |
2016-09-28 | VAL | A:35 | A:31 | 5.0 | 0.032 | H | -62.9 | -36.5 | 5.0 | 0.032 | 0.0 |
HOH |
9.667 |
HG21 |
O |
||
VAL | B:35 | B:31 | 9.0 | 0.058 | H | -64.1 | -35.1 | NA | NA | NA | |||||||||||||
VAL | C:35 | C:31 | 9.0 | 0.058 | H | -63.8 | -35.5 | NA | NA | NA | |||||||||||||
VAL | D:35 | D:31 | 7.0 | 0.045 | H | -64.6 | -35.9 | NA | NA | NA | |||||||||||||
3wan | 1 | O75143,Q9H492 | 81.67 | 5e-71 |
X-RAY |
2013-12-25 | VAL | A:35 | A:36 | 15.0 | 0.097 | H | -59.7 | -43.7 | 15.0 | 0.097 | 0.0 |
HOH |
2.984 |
O |
O |
||
VAL | B:35 | B:36 | 15.0 | 0.097 | H | -57.3 | -44.5 | 15.0 | 0.097 | 0.0 |
HOH |
3.019 |
O |
O |
|||||||||
4zdv | 1 | Q9H492 | 82.35 | 6e-71 |
X-RAY |
2015-06-03 | VAL | A:32 | A:20 | 6.0 | 0.039 | H | -61.4 | -46.3 | 6.0 | 0.039 | 0.0 |
HOH |
3.788 |
CG1 |
O |
||
6tbe | 1 | Q9H492 | 81.9 | 1e-68 |
X-RAY |
2020-11-18 | VAL | A:20 | A:24 | 4.0 | 0.026 | H | -65.3 | -39.5 | 4.0 | 0.026 | 0.0 |
NOV HOH |
6.582 2.966 |
N O |
C1 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9gzq8-f1 | 1 | Q9GZQ8 | 100.0 | 4e-90 | VAL | A:20 | A:20 | 13.0 | 0.084 | H | -65.4 | -46.6 | |
af-a6nce7-f1 | 1 | A6NCE7 | 99.2 | 5e-89 | VAL | A:20 | A:20 | 12.0 | 0.077 | H | -65.8 | -46.6 | |
af-q9h492-f1 | 1 | Q9H492 | 82.5 | 1e-72 | VAL | A:20 | A:20 | 10.0 | 0.065 | H | -61.1 | -47.7 |