Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87432453 . G A CCDS10960.1:NM_022818.4:c.73Gag>Aag_NP_073729.1:p.25E>K Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 GLU A:25 B:25 129.0 0.679 H -56.0 -43.7 129.0 0.679 0.0 HOH
 2.634
 OE2
 O
GLU C:25 A:25 121.0 0.637 H -54.0 -50.7 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 GLU A:30 A:25 147.0 0.774 H -69.7 -41.0 147.0 0.774 0.0 HOH
 2.282
 OE1
 O
GLU C:30 C:25 134.0 0.705 H -72.0 -41.8 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 GLU A:30 A:25 119.0 0.626 H -55.4 -49.9 119.0 0.626 0.0 HOH
 2.667
 OE2
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 GLU A:35 A:25 122.0 0.642 H -63.9 -41.9 122.0 0.642 0.0 HOH
 2.230
 OE1
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 GLU A:25 A:25 165.0 0.868 H -60.6 -41.1 165.0 0.868 0.0 HOH
 7.210
 O
 O
GLU B:25 B:25 127.0 0.668 H -56.7 -40.3 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 GLU A:25 A:25 76.0 NA H -63.3 -38.9 76.0 NA NA ZN
HOH
 4.308
5.727
 O
O
 ZN
O
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 GLU A:25 A:25 134.0 0.705 H -63.2 -38.8 134.0 0.705 0.0 HOH
 5.754
 N
 O
GLU B:25 B:25 137.0 0.721 H -70.3 -42.6 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 GLU A:25 A:25 163.0 0.858 H -70.0 -48.7 163.0 0.858 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 GLU A:25 A:25 120.0 0.632 H -66.8 -42.7 120.0 0.632 0.0 HOH
 2.905
 O
 O
GLU B:25 B:25 138.0 0.726 H -64.9 -47.3 NA NA NA
GLU C:25 C:25 133.0 0.7 H -67.7 -47.8 NA NA NA
GLU D:25 D:25 127.0 0.668 H -76.1 -44.4 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 GLU B:30 B:25 133.0 0.7 H -80.6 -30.7 133.0 0.7 0.0 HOH
 3.820
 N
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 GLU B:30 B:25 122.0 0.642 H -68.7 -48.1 122.0 0.642 0.0 HOH
 4.569
 O
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 GLU A:24 A:25 137.0 0.721 H -74.7 -36.4 137.0 0.721 0.0 HOH
 3.117
 O
 O
GLU B:24 B:25 148.0 0.779 H -76.4 -35.0 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 GLU A:26 A:25 133.0 0.7 H -96.7 -4.9 133.0 0.7 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 GLU A:35 A:25 152.0 0.8 H -72.4 -43.6 149.0 0.784 0.016 B:Q9GZQ8:0.016
 HOH
 4.591
 N
 O
GLU B:35 B:25 116.0 0.611 H -74.4 -29.9 116.0 0.611 0.0 HOH
 2.661
 O
 O
GLU C:35 C:25 131.0 0.689 H -79.1 -27.1 34.0 0.179 0.51 A:Q9GZQ8:0.168
B:Q9GZQ8:0.437
 HOH
 2.739
 OE2
 O
GLU D:35 D:25 130.0 0.684 H -68.0 -48.2 130.0 0.684 0.0 HOH
 4.419
 OE1
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 GLU A:47 A:23 145.0 0.763 H -72.7 -28.5 145.0 0.763 0.0 HOH
 3.222
 OE2
 O
GLU B:47 B:23 159.0 0.837 H -72.7 -31.1 128.0 0.674 0.163 C:Q9GZQ8:0.121
A:Q9GZQ8:0.042
 HOH
 2.664
 O
 O
GLU C:47 C:23 153.0 0.805 H -73.1 -27.6 153.0 0.805 0.0 HOH
 2.398
 OE2
 O
GLU D:47 D:23 157.0 0.826 H -68.6 -27.5 66.0 0.347 0.479 C:Q9GZQ8:0.479
A:Q9GZQ8:0.005
 HOH
 2.764
 O
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 GLU A:30 A:25 159.0 0.837 H -74.4 -46.1 159.0 0.837 0.0 HOH
 5.201
 OE1
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 GLU B:30 B:25 138.0 0.726 H -79.5 -44.9 138.0 0.726 0.0 HOH
 2.567
 OE2
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 GLU B:30 B:25 92.0 0.484 S -102.8 2.2 92.0 0.484 0.0
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 GLU A:38 A:1025 128.0 0.674 H -74.2 -41.7 128.0 0.674 0.0 GOL
HOH
 6.078
2.813
 O
O
 O2
O
GLU B:38 B:1025 79.0 NA H -67.4 -36.5 79.0 NA NA SO4
HOH
 6.779
8.358
 O
N
 O1
O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 GLU A:55 A:40 122.0 0.642 H -79.4 -31.3 122.0 0.642 0.0 HOH
 5.370
 N
 O
GLU B:55 B:40 129.0 0.679 H -52.2 -50.5 NA NA NA
GLU C:55 C:40 136.0 0.716 H -53.3 -40.2 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 GLU A:40 A:41 143.0 0.753 H -72.6 -51.4 143.0 0.753 0.0
GLU B:40 B:41 135.0 0.711 H -72.5 -35.0 NA NA NA
GLU C:40 C:41 130.0 0.684 H -85.2 -41.5 NA NA NA
GLU D:40 D:41 125.0 0.658 H -66.0 -44.7 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 GLU A:40 A:52 124.0 0.653 H -68.5 -20.7 124.0 0.653 0.0 HOH
 7.305
 C
 O
GLU B:40 B:52 166.0 0.874 H -71.6 -17.1 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 GLU A:40 A:40 151.0 0.795 H -72.9 -41.8 151.0 0.795 0.0 HOH
 2.598
 OE1
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 GLU A:40 A:41 125.0 0.658 H -73.0 -38.5 64.0 0.337 0.321 B:Q9GZQ8:0.321
 HOH
 4.301
 OE1
 O
GLU B:40 B:41 121.0 0.637 H -82.3 -38.7 63.0 0.332 0.305 A:Q9GZQ8:0.305
 HOH
 3.321
 OE2
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 GLU A:32 A:25 142.0 0.747 H -68.7 -36.3 142.0 0.747 0.0 SO4
HOH
 8.046
3.659
 O
N
 O4
O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 GLU A:29 A:29 136.0 0.716 H -72.5 -46.4 136.0 0.716 0.0 SO4
HOH
 7.152
3.047
 O
O
 O1
O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 GLU A:29 A:29 158.0 0.832 H -69.4 -44.5 158.0 0.832 0.0 HOH
 5.319
 N
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 GLU A:43 A:25 145.0 0.763 H -72.5 -50.4 145.0 0.763 0.0 SO4
HOH
 6.964
2.566
 O
OE2
 O4
O
GLU B:43 B:25 146.0 0.768 H -71.2 -46.6 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 GLU A:43 A:25 137.0 0.721 H -66.5 -47.0 137.0 0.721 0.0 HOH
 2.847
 OE2
 O
GLU B:43 B:25 138.0 0.726 H -66.7 -47.7 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 GLU A:25 A:25 144.0 0.758 H -79.7 -54.0 144.0 0.758 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 GLU B:22 C:25 71.0 NA H -72.5 -35.5 63.0 NA NA D:Q0PF16:NA
GLU C:22 D:25 125.0 0.658 H -71.4 -34.8 112.0 0.589 0.069 A:Q0PF16:0.068
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 ASP A:27 A:25 133.0 0.887 H -81.0 -43.3 133.0 0.887 0.0 HOH
 2.936
 OD1
 O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 ASP A:27 A:25 112.0 0.747 H -80.6 -39.6 112.0 0.747 0.0 HOH
 5.559
 N
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 ASP A:27 A:25 112.0 0.747 H -79.5 -39.5 112.0 0.747 0.0 HOH
 2.650
 O
 O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 ASP A:25 A:25 121.0 0.807 H -71.4 -44.8 121.0 0.807 0.0 GOL
HOH
 8.127
2.828
 N
OD2
 O2
O
ASP B:25 B:25 121.0 0.807 H -68.4 -48.6 NA NA NA
ASP C:25 C:25 128.0 0.853 H -66.9 -47.6 128.0 0.853 0.0 HOH
 3.602
 OD1
 O
ASP D:25 D:25 109.0 0.727 H -72.8 -52.1 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 ASP A:26 A:25 90.0 NA H -74.9 -28.1 90.0 NA NA
ASP B:26 B:25 83.0 NA H -60.9 -53.0 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 ASP A:29 A:29 129.0 0.86 H -77.3 -47.7 129.0 0.86 0.0 HOH
 5.631
 N
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 ASP A:40 A:36 115.0 0.767 H -66.6 -49.1 115.0 0.767 0.0
ASP B:40 B:36 116.0 0.773 H -66.8 -49.5 NA NA NA
ASP C:40 C:36 122.0 0.813 H -67.2 -49.9 NA NA NA
ASP D:40 D:36 113.0 0.753 H -66.8 -47.6 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 ASP A:40 A:41 95.0 0.633 H -61.9 -41.5 95.0 0.633 0.0 HOH
 2.593
 O
 O
ASP B:40 B:41 104.0 0.693 H -67.1 -33.3 104.0 0.693 0.0 HOH
 3.122
 O
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 ASP A:37 A:25 139.0 0.927 H -71.8 -38.8 139.0 0.927 0.0 HOH
 3.629
 N
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 ASP A:25 A:29 135.0 0.9 H -72.3 -41.8 135.0 0.9 0.0 NOV
HOH
 8.345
2.474
 C
OD2
 O4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 GLU A:25 A:25 125.0 0.658 H -63.0 -42.8
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 GLU A:25 A:25 137.0 0.721 H -64.4 -43.4
af-q9h492-f1 1 Q9H492 82.5 1e-72 ASP A:25 A:25 109.0 0.727 H -66.4 -41.0