Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr16 | 87435786 | . | A | C | CCDS10960.1:NM_022818.4:c.102atA>atC_NP_073729.1:p.34I>I | Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5gmv | 1 | Q9GZQ8 | 100.0 | 1e-89 |
X-RAY |
2017-03-08 | ILE | A:34 | B:34 | 1.0 | 0.006 | E | -98.6 | 117.1 | 0.0 | 0.0 | 0.006 |
B:Q8IVP5:0.006 |
HOH |
3.342 |
O |
O |
|
| ILE | C:34 | A:34 | 0.0 | 0.0 | E | -94.1 | 117.0 | NA | NA | NA | |||||||||||||
| 2zjd | 1 | Q9GZQ8 | 100.0 | 1e-89 |
X-RAY |
2008-06-03 | ILE | A:39 | A:34 | 0.0 | 0.0 | E | -105.5 | 122.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.741 |
O |
O |
||
| ILE | C:39 | C:34 | 0.0 | 0.0 | E | -100.4 | 122.7 | NA | NA | NA | |||||||||||||
| 5d94 | 1 | Q9GZQ8 | 100.0 | 1e-89 |
X-RAY |
2015-10-21 | ILE | A:39 | A:34 | 0.0 | 0.0 | E | -100.3 | 122.2 | 0.0 | 0.0 | 0.0 |
HOH |
3.739 |
CG2 |
O |
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| 6lan | 1 | Q8IVM0,Q9GZQ8 | 99.2 | 1e-88 |
X-RAY |
2020-09-30 | ILE | A:44 | A:34 | 2.0 | 0.011 | E | -95.9 | 120.0 | 2.0 | 0.011 | 0.0 |
HOH |
3.054 |
HG22 |
O |
||
| 5wrd | 1 | Q9CQV6 | 95.2 | 2e-86 |
X-RAY |
2017-03-29 | ILE | A:34 | A:34 | 0.0 | 0.0 | E | -106.8 | 121.2 | 0.0 | 0.0 | 0.0 |
HOH |
3.764 |
O |
O |
||
| ILE | B:34 | B:34 | 0.0 | 0.0 | E | -104.4 | 123.5 | NA | NA | NA | |||||||||||||
| 5yiq | 1 | Q9CQV6 | 95.2 | 2e-86 |
X-RAY |
2018-05-23 | ILE | A:34 | A:34 | 0.0 | 0.0 | E | -98.9 | 119.7 | 0.0 | 0.0 | 0.0 |
HOH |
7.143 |
O |
O |
||
| 5yis | 1 | Q9CQV6 | 95.2 | 2e-86 |
X-RAY |
2018-05-23 | ILE | A:34 | A:34 | 3.0 | 0.017 | E | -96.5 | 122.0 | 0.0 | 0.0 | 0.017 |
D:Q01484:0.017 |
HOH |
3.598 |
O |
O |
|
| ILE | B:34 | B:34 | 0.0 | 0.0 | E | -100.6 | 123.4 | NA | NA | NA | |||||||||||||
| 2n9x | 1 | Q9GZQ8 | 100.0 | 3e-86 |
NMR |
2016-12-14 | ILE | A:34 | A:34 | 6.0 | 0.034 | E | -107.7 | 141.2 | 6.0 | 0.034 | 0.0 | ||||||
| 6j04 | 1 | Q9GZQ8 | 99.19 | 6e-86 |
X-RAY |
2019-11-06 | ILE | A:34 | A:34 | 0.0 | 0.0 | E | -101.7 | 120.4 | 0.0 | 0.0 | 0.0 |
HOH |
3.921 |
O |
O |
||
| ILE | B:34 | B:34 | 0.0 | 0.0 | E | -106.6 | 121.9 | NA | NA | NA | |||||||||||||
| ILE | C:34 | C:34 | 0.0 | 0.0 | E | -101.8 | 121.9 | NA | NA | NA | |||||||||||||
| ILE | D:34 | D:34 | 0.0 | 0.0 | E | -100.7 | 120.9 | NA | NA | NA | |||||||||||||
| 2z0e | 2 | Q62625 | 95.97 | 6e-86 |
X-RAY |
2007-05-22 | ILE | B:39 | B:34 | 0.0 | 0.0 | E | -103.2 | 120.4 | 0.0 | 0.0 | 0.0 |
HOH |
3.699 |
O |
O |
||
| 2zzp | 2 | Q62625 | 95.97 | 6e-86 |
X-RAY |
2009-03-03 | ILE | B:39 | B:34 | 0.0 | 0.0 | E | -108.6 | 117.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.552 |
O |
O |
||
| 5xad | 1 | Q9GZQ8 | 100.0 | 2e-85 |
X-RAY |
2017-07-12 | ILE | A:33 | A:34 | 1.0 | 0.006 | E | -102.0 | 122.4 | 1.0 | 0.006 | 0.0 |
HOH |
3.474 |
O |
O |
||
| ILE | B:33 | B:34 | 1.0 | 0.006 | E | -99.0 | 119.2 | NA | NA | NA | |||||||||||||
| 2k6q | 1 | Q62625 | 98.33 | 3e-85 |
NMR |
2008-09-02 | ILE | A:35 | A:34 | 2.0 | 0.011 | E | -122.1 | 98.8 | 2.0 | 0.011 | 0.0 | ||||||
| 5xac | 1 | Q9GZQ8 | 100.0 | 4e-85 |
X-RAY |
2017-07-12 | ILE | A:44 | A:34 | 0.0 | 0.0 | E | -103.6 | 125.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.775 |
O |
O |
||
| ILE | B:44 | B:34 | 0.0 | 0.0 | E | -105.4 | 122.1 | 0.0 | 0.0 | 0.0 |
HOH |
3.934 |
CG2 |
O |
|||||||||
| ILE | C:44 | C:34 | 1.0 | 0.006 | E | -100.2 | 120.7 | 0.0 | 0.0 | 0.006 |
D:Q9GZQ8:0.006 |
HOH |
3.757 |
O |
O |
||||||||
| ILE | D:44 | D:34 | 3.0 | 0.017 | E | -100.4 | 122.7 | 3.0 | 0.017 | 0.0 |
HOH |
3.488 |
O |
O |
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| 5xae | 1 | Q9GZQ8 | 100.0 | 4e-85 |
X-RAY |
2017-07-12 | ILE | A:56 | A:32 | 0.0 | 0.0 | E | -100.9 | 127.1 | 0.0 | 0.0 | 0.0 |
HOH |
3.994 |
CG2 |
O |
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| ILE | B:56 | B:32 | 0.0 | 0.0 | E | -100.1 | 126.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.875 |
CG2 |
O |
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| ILE | C:56 | C:32 | 0.0 | 0.0 | E | -97.2 | 123.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.852 |
O |
O |
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| ILE | D:56 | D:32 | 0.0 | 0.0 | E | -96.5 | 125.6 | 0.0 | 0.0 | 0.0 |
HOH |
3.968 |
O |
O |
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| 1ugm | 1 | Q62625 | 98.33 | 5e-85 |
X-RAY |
2004-07-06 | ILE | A:39 | A:34 | 0.0 | 0.0 | E | -110.0 | 122.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.756 |
O |
O |
||
| 2z0d | 2 | Q62625 | 98.33 | 5e-85 |
X-RAY |
2007-05-22 | ILE | B:39 | B:34 | 0.0 | 0.0 | E | -105.0 | 115.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.457 |
O |
O |
||
| 5ms2 | 2 | Q9GZQ8 | 100.0 | 6e-85 |
X-RAY |
2017-04-19 | ILE | B:39 | B:34 | 0.0 | 0.0 | E | -100.4 | 110.5 | 0.0 | 0.0 | 0.0 | ||||||
| 5v4k | 1 | Q9GZQ8 | 100.0 | 2e-84 |
X-RAY |
2017-05-17 | ILE | A:47 | A:1034 | 2.0 | 0.011 | E | -94.1 | 126.3 | 2.0 | 0.011 | 0.0 |
HOH |
3.750 |
O |
O |
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| ILE | B:47 | B:1034 | 0.0 | 0.0 | E | -96.6 | 127.4 | 0.0 | 0.0 | 0.0 |
HOH |
4.101 |
O |
O |
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| 3vtw | 1 | Q96CV9,Q9GZQ8 | 100.0 | 3e-84 |
X-RAY |
2013-06-26 | ILE | A:64 | A:49 | 0.0 | 0.0 | E | -92.7 | 124.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.725 |
O |
O |
||
| ILE | B:64 | B:49 | 0.0 | 0.0 | E | -117.3 | 120.2 | NA | NA | NA | |||||||||||||
| ILE | C:64 | C:49 | 0.0 | 0.0 | E | -103.1 | 127.9 | NA | NA | NA | |||||||||||||
| 3wao | 1 | O75143,Q9GZQ8 | 100.0 | 3e-84 |
X-RAY |
2013-12-25 | ILE | A:49 | A:50 | 0.0 | 0.0 | E | -112.3 | 117.0 | 0.0 | 0.0 | 0.0 | ||||||
| ILE | B:49 | B:50 | 0.0 | 0.0 | E | -114.8 | 110.5 | NA | NA | NA | |||||||||||||
| ILE | C:49 | C:50 | 0.0 | 0.0 | E | -98.9 | 130.1 | NA | NA | NA | |||||||||||||
| ILE | D:49 | D:50 | 0.0 | 0.0 | E | -95.2 | 108.7 | NA | NA | NA | |||||||||||||
| 3x0w | 1 | Q9GZQ8 | 100.0 | 5e-84 |
X-RAY |
2015-01-14 | ILE | A:49 | A:61 | 1.0 | 0.006 | E | -103.6 | 118.9 | 1.0 | 0.006 | 0.0 |
HOH |
6.985 |
O |
O |
||
| ILE | B:49 | B:61 | 3.0 | 0.017 | E | -103.7 | 116.8 | NA | NA | NA | |||||||||||||
| 3vtv | 1 | Q96CV9,Q9GZQ8 | 100.0 | 5e-84 |
X-RAY |
2013-06-26 | ILE | A:49 | A:49 | 0.0 | 0.0 | E | -109.0 | 121.1 | 0.0 | 0.0 | 0.0 |
HOH |
3.900 |
O |
O |
||
| 4waa | 1 | Q9GZQ8 | 100.0 | 6e-84 |
X-RAY |
2015-09-09 | ILE | A:49 | A:50 | 2.0 | 0.011 | E | -96.8 | 122.0 | 2.0 | 0.011 | 0.0 |
HOH |
3.550 |
O |
O |
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| ILE | B:49 | B:50 | 2.0 | 0.011 | E | -96.1 | 130.2 | 2.0 | 0.011 | 0.0 |
HOH |
3.806 |
O |
O |
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| 5dcn | 1 | Q9GZQ8 | 100.0 | 6e-84 |
X-RAY |
2016-03-09 | ILE | A:41 | A:34 | 0.0 | 0.0 | E | -98.8 | 121.1 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
7.482 3.711 |
CG2 O |
O1 O |
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| 3vtu | 1 | Q9GZQ8 | 99.16 | 7e-84 |
X-RAY |
2013-06-26 | ILE | A:38 | A:38 | 0.0 | 0.0 | E | -106.9 | 121.2 | 0.0 | 0.0 | 0.0 |
SO4 SO4 SO4 HOH |
9.382 6.571 9.951 4.075 |
CD1 CD1 CG1 O |
O3 O1 O3 O |
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| 7elg | 1 | Q9GZQ8 | 99.16 | 7e-84 |
X-RAY |
2021-10-13 | ILE | A:38 | A:38 | 0.0 | 0.0 | E | -108.0 | 122.7 | 0.0 | 0.0 | 0.0 |
8Z6 SO4 HOH |
9.281 9.995 3.951 |
N CG1 O |
OAN O4 O |
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| 5ms5 | 1 | Q5ZUV9,Q9GZQ8 | 100.0 | 9e-84 |
X-RAY |
2017-04-19 | ILE | A:52 | A:34 | 0.0 | 0.0 | E | -104.9 | 124.9 | 0.0 | 0.0 | 0.0 |
SO4 GOL HOH |
7.468 6.915 3.785 |
CD1 CD1 O |
O2 C3 O |
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| ILE | B:52 | B:34 | 2.0 | 0.011 | E | -104.7 | 124.3 | NA | NA | NA | |||||||||||||
| 5ms6 | 1 | Q9GZQ8 | 100.0 | 9e-84 |
X-RAY |
2017-04-19 | ILE | A:52 | A:34 | 0.0 | 0.0 | E | -100.6 | 122.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.735 |
O |
O |
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| ILE | B:52 | B:34 | 3.0 | 0.017 | E | -102.5 | 122.4 | NA | NA | NA | |||||||||||||
| 2lue | 1 | Q9GZQ8 | 100.0 | 7e-82 |
NMR |
2013-07-17 | ILE | A:34 | A:34 | 0.0 | 0.0 | E | -94.1 | 131.4 | 0.0 | 0.0 | 0.0 | ||||||
| 5w9a | 2 | Q9GZQ8 | 100.0 | 7e-81 |
X-RAY |
2018-10-10 | ILE | B:31 | C:34 | 4.0 | 0.023 | E | -106.6 | 121.7 | 1.0 | 0.006 | 0.017 |
A:Q0PF16:0.017 |
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| ILE | C:31 | D:34 | 3.0 | 0.017 | E | -106.3 | 120.7 | 1.0 | 0.006 | 0.011 |
D:Q0PF16:0.011 |
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| 7r9w | 1 | Q9H492 | 82.5 | 3e-72 |
X-RAY |
2022-01-12 | ILE | A:36 | A:34 | 0.0 | 0.0 | E | -118.0 | 122.5 | 0.0 | 0.0 | 0.0 |
JO4 GOL HOH |
8.127 9.421 3.996 |
C N O |
C11 O1 O |
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| 7r9z | 1 | Q9H492 | 82.5 | 3e-72 |
X-RAY |
2022-01-12 | ILE | A:36 | A:34 | 0.0 | 0.0 | E | -110.7 | 126.4 | 0.0 | 0.0 | 0.0 |
2LZ HOH |
9.948 3.947 |
N O |
C12 O |
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| 7ra0 | 1 | Q9H492 | 82.5 | 3e-72 |
X-RAY |
2022-01-12 | ILE | A:36 | A:34 | 0.0 | 0.0 | E | -112.3 | 124.7 | 0.0 | 0.0 | 0.0 |
2JI HOH |
9.800 3.876 |
N O |
C1 O |
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| 5cx3 | 1 | Q9H492 | 82.5 | 4e-72 |
X-RAY |
2016-08-03 | ILE | A:34 | A:34 | 0.0 | 0.0 | E | -95.8 | 122.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.718 |
O |
O |
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| ILE | B:34 | B:34 | 0.0 | 0.0 | E | -95.5 | 123.2 | NA | NA | NA | |||||||||||||
| ILE | C:34 | C:34 | 0.0 | 0.0 | E | -94.6 | 125.1 | 0.0 | 0.0 | 0.0 |
HOH |
7.508 |
O |
O |
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| ILE | D:34 | D:34 | 0.0 | 0.0 | E | -97.6 | 123.8 | NA | NA | NA | |||||||||||||
| 3eci | 1 | Q9H492 | 82.5 | 5e-72 |
X-RAY |
2008-10-14 | ILE | A:35 | A:34 | 0.0 | 0.0 | E | -100.7 | 124.4 | 0.0 | 0.0 | 0.0 | ||||||
| ILE | B:35 | B:34 | 0.0 | 0.0 | E | -97.9 | 122.6 | NA | NA | NA | |||||||||||||
| 3wal | 1 | Q9H492 | 80.99 | 4e-71 |
X-RAY |
2013-12-25 | ILE | A:38 | A:38 | 0.0 | 0.0 | E | -108.5 | 119.8 | 0.0 | 0.0 | 0.0 |
MLT HOH |
9.648 3.938 |
CG1 O |
O4 O |
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| 5dpr | 1 | Q9Y4G2,Q9H492 | 81.67 | 5e-71 |
X-RAY |
2016-09-28 | ILE | A:49 | A:45 | 0.0 | 0.0 | E | -104.6 | 123.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.658 |
HG22 |
O |
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| ILE | B:49 | B:45 | 0.0 | 0.0 | E | -104.6 | 123.0 | NA | NA | NA | |||||||||||||
| ILE | C:49 | C:45 | 0.0 | 0.0 | E | -105.4 | 121.8 | NA | NA | NA | |||||||||||||
| ILE | D:49 | D:45 | 0.0 | 0.0 | E | -105.0 | 122.0 | NA | NA | NA | |||||||||||||
| 3wan | 1 | O75143,Q9H492 | 81.67 | 5e-71 |
X-RAY |
2013-12-25 | ILE | A:49 | A:50 | 0.0 | 0.0 | E | -110.3 | 120.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.810 |
O |
O |
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| ILE | B:49 | B:50 | 1.0 | 0.006 | E | -103.1 | 127.2 | 1.0 | 0.006 | 0.0 |
HOH |
3.780 |
O |
O |
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| 4zdv | 1 | Q9H492 | 82.35 | 6e-71 |
X-RAY |
2015-06-03 | ILE | A:46 | A:34 | 0.0 | 0.0 | E | -106.0 | 123.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.023 |
O |
O |
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| 6tbe | 1 | Q9H492 | 81.9 | 1e-68 |
X-RAY |
2020-11-18 | ILE | A:34 | A:38 | 0.0 | 0.0 | E | -115.7 | 122.9 | 0.0 | 0.0 | 0.0 |
NOV HOH |
7.935 3.871 |
CD1 O |
C23 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9gzq8-f1 | 1 | Q9GZQ8 | 100.0 | 4e-90 | ILE | A:34 | A:34 | 1.0 | 0.006 | E | -102.3 | 119.1 | |
| af-a6nce7-f1 | 1 | A6NCE7 | 99.2 | 5e-89 | ILE | A:34 | A:34 | 0.0 | 0.0 | E | -101.6 | 117.7 | |
| af-q9h492-f1 | 1 | Q9H492 | 82.5 | 1e-72 | ILE | A:34 | A:34 | 1.0 | 0.006 | E | -101.3 | 119.9 | |