Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87435802 . G A CCDS10960.1:NM_022818.4:c.118Ggt>Agt_NP_073729.1:p.40G>S Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 GLY A:40 B:40 15.0 0.2 T -85.0 3.4 15.0 0.2 0.0 HOH
 3.984
 O
 O
GLY C:40 A:40 14.0 0.187 T -94.5 6.1 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 GLY A:45 A:40 43.0 0.573 T 80.4 -9.2 43.0 0.573 0.0 HOH
 3.290
 N
 O
GLY C:45 C:40 36.0 0.48 T -92.2 5.1 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 GLY A:45 A:40 63.0 0.84 T 118.5 -22.0 63.0 0.84 0.0 HOH
 2.936
 N
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 GLY A:50 A:40 11.0 0.147 T -93.3 -2.1 11.0 0.147 0.0 HOH
 2.979
 HA3
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 GLY A:40 A:40 24.0 0.32 T -94.7 7.7 24.0 0.32 0.0 HOH
 4.011
 O
 O
GLY B:40 B:40 45.0 0.6 T -86.9 4.5 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 GLY A:40 A:40 46.0 0.613 T -85.5 -7.0 46.0 0.613 0.0
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 GLY A:40 A:40 48.0 0.64 T -92.8 4.4 48.0 0.64 0.0 HOH
 5.134
 N
 O
GLY B:40 B:40 39.0 0.52 T -84.9 -3.1 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 GLY A:40 A:40 29.0 0.387 T -74.1 -21.7 29.0 0.387 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 GLY A:40 A:40 53.0 0.707 T 82.0 -4.9 53.0 0.707 0.0 SO4
HOH
 7.800
3.951
 C
O
 O1
O
GLY B:40 B:40 48.0 0.64 T 79.9 5.5 NA NA NA
GLY C:40 C:40 63.0 0.84 T 82.3 8.5 NA NA NA
GLY D:40 D:40 55.0 0.733 T 77.9 9.6 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 GLY B:45 B:40 49.0 0.653 T -92.2 -3.2 47.0 0.627 0.026 A:Q9Y4P1:0.027
 HOH
 5.043
 N
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 GLY B:45 B:40 42.0 0.56 T -85.5 -10.1 41.0 0.547 0.013 A:Q9Y4P1:0.013
 HOH
 4.243
 O
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 GLY A:39 A:40 44.0 0.587 T -123.2 10.2 44.0 0.587 0.0 HOH
 4.648
 O
 O
GLY B:39 B:40 50.0 0.667 T -102.2 9.9 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 GLY A:41 A:40 65.0 0.867 T 112.1 19.9 65.0 0.867 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 GLY A:50 A:40 28.0 0.373 T -100.5 26.3 28.0 0.373 0.0 HOH
 3.963
 O
 O
GLY B:50 B:40 55.0 0.733 T -86.8 -2.6 31.0 0.413 0.32 C:Q9GZQ8:0.32
 HOH
 3.197
 O
 O
GLY C:50 C:40 38.0 0.507 T -87.6 -17.1 38.0 0.507 0.0 HOH
 5.455
 C
 O
GLY D:50 D:40 46.0 0.613 T -98.9 18.0 46.0 0.613 0.0 HOH
 3.748
 C
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 GLY A:62 A:38 39.0 0.52 T -98.6 21.9 39.0 0.52 0.0 HOH
 4.158
 O
 O
GLY B:62 B:38 29.0 0.387 T -96.3 16.5 29.0 0.387 0.0 HOH
 4.618
 N
 O
GLY C:62 C:38 34.0 0.453 T -97.4 20.3 29.0 0.387 0.066 B:Q9GZQ8:0.067
 HOH
 3.923
 O
 O
GLY D:62 D:38 34.0 0.453 T -98.9 19.0 34.0 0.453 0.0 HOH
 3.574
 O
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 GLY A:45 A:40 49.0 0.653 T -89.5 -5.8 49.0 0.653 0.0 HOH
 9.412
 N
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 GLY B:45 B:40 51.0 0.68 T -96.4 7.6 49.0 0.653 0.027 A:Q9Y4P1:0.027
 HOH
 2.752
 O
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 GLY B:45 B:40 49.0 0.653 T -93.2 21.2 49.0 0.653 0.0
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 GLY A:53 A:1040 46.0 0.613 T -93.4 34.5 46.0 0.613 0.0 HOH
 8.902
 N
 O
GLY B:53 B:1040 58.0 0.773 T -99.2 66.7 58.0 0.773 0.0 HOH
 4.996
 N
 O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 GLY A:70 A:55 30.0 0.4 T -93.2 25.1 30.0 0.4 0.0 HOH
 4.900
 N
 O
GLY B:70 B:55 37.0 0.493 T -80.6 11.8 NA NA NA
GLY C:70 C:55 33.0 0.44 T -108.3 20.2 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 GLY A:55 A:56 28.0 0.373 T -89.8 5.1 28.0 0.373 0.0
GLY B:55 B:56 32.0 0.427 T -95.6 7.5 NA NA NA
GLY C:55 C:56 38.0 0.507 T -102.3 16.3 NA NA NA
GLY D:55 D:56 24.0 0.32 T -105.5 22.7 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 GLY A:55 A:67 48.0 0.64 S -86.5 91.1 48.0 0.64 0.0 HOH
 9.440
 N
 O
GLY B:55 B:67 67.0 0.893 S 91.6 57.8 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 GLY A:55 A:55 38.0 0.507 T -95.7 16.7 38.0 0.507 0.0 HOH
 3.836
 O
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 GLY A:55 A:56 41.0 0.547 T -77.5 -0.5 41.0 0.547 0.0 HOH
 5.210
 N
 O
GLY B:55 B:56 32.0 0.427 T -80.3 4.5 32.0 0.427 0.0 HOH
 3.739
 O
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 GLY A:47 A:40 42.0 0.56 T -99.4 14.1 42.0 0.56 0.0 SO4
HOH
 6.041
3.476
 N
O
 O3
O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 GLY A:44 A:44 35.0 0.467 T -89.8 11.9 35.0 0.467 0.0 HOH
 4.040
 O
 O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 GLY A:44 A:44 34.0 0.453 T -91.0 13.3 34.0 0.453 0.0 HOH
 3.743
 O
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 GLY A:58 A:40 63.0 0.84 T 91.8 4.2 63.0 0.84 0.0 HOH
 2.669
 N
 O
GLY B:58 B:40 50.0 0.667 T -91.8 0.7 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 GLY A:58 A:40 47.0 0.627 T -84.0 4.2 47.0 0.627 0.0 HOH
 5.813
 N
 O
GLY B:58 B:40 49.0 0.653 T -84.8 5.9 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 GLY A:40 A:40 29.0 0.387 T -110.4 6.3 29.0 0.387 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 GLY B:37 C:40 41.0 0.547 S -127.6 23.0 41.0 0.547 0.0
GLY C:37 D:40 37.0 0.493 T -125.8 25.7 37.0 0.493 0.0
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 GLY A:42 A:40 47.0 0.627 T -96.5 10.0 47.0 0.627 0.0 HOH
 6.154
 N
 O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 GLY A:42 A:40 47.0 0.627 T -90.6 12.9 47.0 0.627 0.0 HOH
 3.808
 O
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 GLY A:42 A:40 39.0 0.52 T -93.8 18.3 39.0 0.52 0.0 HOH
 3.618
 O
 O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 GLY A:40 A:40 61.0 0.813 T 85.7 2.4 61.0 0.813 0.0 HOH
 4.881
 N
 O
GLY B:40 B:40 67.0 0.893 T 86.0 3.2 NA NA NA
GLY C:40 C:40 69.0 0.92 T 87.8 5.2 69.0 0.92 0.0 HOH
 8.840
 O
 O
GLY D:40 D:40 59.0 0.787 T 89.7 4.2 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 GLY A:41 A:40 65.0 0.867 T -93.4 22.1 65.0 0.867 0.0
GLY B:41 B:40 79.0 1.0 T -90.0 14.4 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 GLY A:44 A:44 54.0 0.72 T -80.5 6.2 54.0 0.72 0.0 HOH
 4.362
 O
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 GLY A:55 A:51 58.0 0.773 S -69.1 -27.1 58.0 0.773 0.0 HOH
 7.778
 O
 O
GLY B:55 B:51 44.0 0.587 S -68.9 -29.5 NA NA NA
GLY C:55 C:51 53.0 0.707 S -70.9 -28.9 NA NA NA
GLY D:55 D:51 59.0 0.787 S -69.3 -27.7 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 GLY A:55 A:56 23.0 0.307 T -80.3 2.7 23.0 0.307 0.0 HOH
 3.064
 N
 O
GLY B:55 B:56 54.0 0.72 T -88.4 11.3 1.0 0.013 0.707 A:O75143+Q9H492:0.707
 HOH
 3.937
 CA
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 GLY A:52 A:40 48.0 0.64 T -86.7 -6.1 48.0 0.64 0.0 HOH
 3.637
 O
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 GLY A:40 A:44 28.0 0.373 T -91.4 19.0 28.0 0.373 0.0 HOH
 3.691
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 GLY A:40 A:40 52.0 0.693 T 111.0 -11.2
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 GLY A:40 A:40 53.0 0.707 T 96.0 -5.2
af-q9h492-f1 1 Q9H492 82.5 1e-72 GLY A:40 A:40 53.0 0.707 T 107.9 -11.5