Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87435877 . A C CCDS10960.1:NM_022818.4:c.193Aag>Cag_NP_073729.1:p.65K>Q Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 LYS A:65 B:65 131.0 0.655 H -57.8 -45.9 131.0 0.655 0.0 HOH
 8.187
 O
 O
LYS C:65 A:65 125.0 0.625 H -56.3 -44.4 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 LYS A:70 A:65 127.0 0.635 H -57.8 -45.5 127.0 0.635 0.0 HOH
 2.785
 NZ
 O
LYS C:70 C:65 133.0 0.665 H -56.0 -43.9 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 LYS A:70 A:65 116.0 0.58 H -59.2 -38.7 116.0 0.58 0.0 HOH
 2.370
 NZ
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 LYS A:75 A:65 115.0 0.575 H -56.8 -43.6 115.0 0.575 0.0 HOH
 2.816
 HG3
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 LYS A:65 A:65 105.0 0.525 H -63.5 -34.1 105.0 0.525 0.0 GOL
HOH
 8.906
6.502
 N
N
 O1
O
LYS B:65 B:65 111.0 0.555 H -61.6 -40.0 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 LYS A:65 A:65 97.0 NA H -65.5 -34.9 67.0 NA NA B:O70511:NA
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 LYS A:65 A:65 137.0 0.685 H -63.7 -37.4 31.0 0.155 0.53 D:Q01484:0.53
 GOL
HOH
 9.307
3.638
 N
O
 C1
O
LYS B:65 B:65 96.0 NA H -63.1 -41.1 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 LYS A:65 A:65 114.0 0.57 H -62.4 -51.2 114.0 0.57 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 LYS A:65 A:65 127.0 0.635 H -65.3 -40.8 127.0 0.635 0.0 HOH
 2.934
 NZ
 O
LYS B:65 B:65 121.0 0.605 H -58.3 -42.1 NA NA NA
LYS C:65 C:65 111.0 0.555 H -67.2 -30.0 NA NA NA
LYS D:65 D:65 103.0 0.515 H -60.7 -35.2 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 LYS B:70 B:65 134.0 0.67 H -65.6 -45.0 127.0 0.635 0.035 A:Q9Y4P1:0.035
 HOH
 2.801
 O
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 LYS B:70 B:65 121.0 0.605 H -62.6 -46.8 114.0 0.57 0.035 A:Q9Y4P1:0.035
 HOH
 2.652
 O
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 LYS A:64 A:65 140.0 0.7 H -70.8 -31.7 140.0 0.7 0.0 HOH
 2.683
 O
 O
LYS B:64 B:65 115.0 0.575 H -72.3 -36.0 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 LYS A:66 A:65 112.0 0.56 H -51.7 -22.9 89.0 0.445 0.115 B:O08623:0.115
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 LYS A:75 A:65 135.0 0.675 H -61.7 -39.1 135.0 0.675 0.0 HOH
 2.803
 O
 O
LYS B:75 B:65 97.0 0.485 H -57.0 -42.1 97.0 0.485 0.0 HOH
 2.433
 NZ
 O
LYS C:75 C:65 110.0 0.55 H -59.7 -42.5 92.0 0.46 0.09 D:Q9GZQ8:0.09
 HOH
 3.047
 NZ
 O
LYS D:75 D:65 108.0 0.54 H -63.8 -38.1 108.0 0.54 0.0 HOH
 3.701
 NZ
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 LYS A:87 A:63 136.0 0.68 H -64.8 -35.3 65.0 0.325 0.355 C:Q9GZQ8:0.355
 HOH
 2.617
 O
 O
LYS B:87 B:63 135.0 0.675 H -63.7 -37.4 135.0 0.675 0.0 HOH
 6.452
 O
 O
LYS C:87 C:63 128.0 0.64 H -63.4 -36.2 128.0 0.64 0.0 HOH
 2.841
 NZ
 O
LYS D:87 D:63 153.0 0.765 H -65.1 -35.4 153.0 0.765 0.0 HOH
 4.061
 CE
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 LYS A:70 A:65 96.0 0.48 H -59.3 -40.8 96.0 0.48 0.0 HOH
 2.899
 O
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 LYS B:70 B:65 58.0 NA H -62.9 -39.7 58.0 NA NA HOH
 2.736
 O
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 LYS B:70 B:65 113.0 0.565 H -67.3 -43.6 67.0 0.335 0.23 A:Q5ZUV9:0.23
 HOH
 5.215
 O
 O
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 LYS A:78 A:1065 144.0 0.72 H -61.6 -38.7 144.0 0.72 0.0 SO4
HOH
 7.383
2.798
 C
O
 O2
O
LYS B:78 B:1065 138.0 0.69 H -59.7 -39.5 138.0 0.69 0.0 HOH
 2.804
 O
 O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 LYS A:95 A:80 104.0 0.52 H -67.0 -37.8 104.0 0.52 0.0 HOH
 3.801
 CB
 O
LYS B:95 B:80 127.0 0.635 H -59.6 -46.9 NA NA NA
LYS C:95 C:80 145.0 0.725 H -56.3 -42.1 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 LYS A:80 A:81 122.0 0.61 H -50.9 -45.0 122.0 0.61 0.0
LYS B:80 B:81 108.0 0.54 H -69.8 -51.8 NA NA NA
LYS C:80 C:81 118.0 0.59 H -59.9 -50.0 NA NA NA
LYS D:80 D:81 95.0 0.475 H -48.0 -55.6 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 LYS A:80 A:92 137.0 0.685 H -41.1 -47.8 137.0 0.685 0.0 HOH
 4.833
 CD
 O
LYS B:80 B:92 141.0 0.705 H -44.3 -48.0 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 LYS A:80 A:80 136.0 0.68 H -63.2 -40.5 136.0 0.68 0.0 SO4
HOH
 4.633
2.935
 CE
O
 O2
O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 LYS A:80 A:81 122.0 0.61 H -59.9 -43.0 122.0 0.61 0.0 HOH
 3.787
 N
 O
LYS B:80 B:81 126.0 0.63 H -63.9 -43.3 126.0 0.63 0.0 HOH
 2.829
 O
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 LYS A:72 A:65 80.0 0.4 H -66.5 -36.8 80.0 0.4 0.0 HOH
 3.208
 CB
 O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 LYS A:69 A:69 131.0 0.655 H -63.7 -39.5 131.0 0.655 0.0 HOH
 2.937
 O
 O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 LYS A:69 A:69 135.0 0.675 H -61.3 -41.0 135.0 0.675 0.0 HOH
 3.073
 O
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 LYS A:83 A:65 133.0 0.665 H -55.4 -46.1 133.0 0.665 0.0 HOH
 2.693
 O
 O
LYS B:83 B:65 133.0 0.665 H -56.7 -48.8 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 LYS A:83 A:65 127.0 0.635 H -58.5 -43.0 127.0 0.635 0.0 HOH
 4.404
 N
 O
LYS B:83 B:65 142.0 0.71 H -60.1 -45.4 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 LYS A:65 A:65 67.0 0.335 H -60.0 -34.6 64.0 0.32 0.015 B:Q96CV9:0.015
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 LYS B:62 C:65 104.0 0.52 H -70.6 -32.5 77.0 0.385 0.135 A:Q0PF16:0.135
LYS C:62 D:65 103.0 0.515 H -69.1 -34.5 70.0 0.35 0.165 D:Q0PF16:0.165
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 LYS A:67 A:65 109.0 0.545 H -65.7 -35.0 109.0 0.545 0.0 JO4
HOH
 7.921
2.507
 C
NZ
 C12
O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 LYS A:67 A:65 120.0 0.6 H -64.6 -38.2 120.0 0.6 0.0 2LZ
HOH
 8.623
3.809
 C
CG
 N10
O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 LYS A:67 A:65 118.0 0.59 H -65.9 -38.3 118.0 0.59 0.0 2JI
HOH
 8.676
2.830
 C
O
 C1
O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 LYS A:65 A:65 133.0 0.665 H -63.5 -40.5 133.0 0.665 0.0 HOH
 5.176
 NZ
 O
LYS B:65 B:65 122.0 0.61 H -64.5 -38.7 NA NA NA
LYS C:65 C:65 134.0 0.67 H -64.6 -37.0 62.0 0.31 0.36 G:Q9BQS8:0.36
 HOH
 7.394
 N
 O
LYS D:65 D:65 122.0 0.61 H -63.8 -38.0 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 LYS A:66 A:65 57.0 NA H -64.8 -40.0 57.0 NA NA
LYS B:66 B:65 59.0 NA H -62.9 -43.4 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 LYS A:69 A:69 114.0 0.57 H -64.1 -37.9 114.0 0.57 0.0 HOH
 2.898
 O
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 LYS A:80 A:76 122.0 0.61 H -63.0 -42.7 122.0 0.61 0.0 HOH
 7.431
 HA
 O
LYS B:80 B:76 130.0 0.65 H -65.0 -37.1 NA NA NA
LYS C:80 C:76 126.0 0.63 H -62.2 -41.3 NA NA NA
LYS D:80 D:76 116.0 0.58 H -62.5 -42.0 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 LYS A:80 A:81 121.0 0.605 H -66.4 -38.0 118.0 0.59 0.015 B:O75143+Q9H492:0.015
 HOH
 2.842
 O
 O
LYS B:80 B:81 140.0 0.7 H -62.0 -41.6 140.0 0.7 0.0 HOH
 2.695
 O
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 LYS A:77 A:65 104.0 0.52 H -66.8 -37.2 104.0 0.52 0.0 HOH
 3.001
 O
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 LYS A:65 A:69 136.0 0.68 H -64.0 -36.6 136.0 0.68 0.0 NOV
HOH
 7.710
2.809
 C
NZ
 C22
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 LYS A:65 A:65 117.0 0.585 H -61.6 -39.7
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 LYS A:65 A:65 121.0 0.605 H -62.4 -40.4
af-q9h492-f1 1 Q9H492 82.5 1e-72 LYS A:65 A:65 125.0 0.625 H -61.9 -40.0