Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87436551 . A C CCDS10960.1:NM_022818.4:c.226Aat>Cat_NP_073729.1:p.76N>H Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 ASN A:76 B:76 160.0 1.0 T -111.5 14.3 160.0 1.0 0.0 HOH
 6.834
 O
 O
ASN C:76 A:76 165.0 1.0 S -83.1 -16.6 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 ASN A:81 A:76 149.0 0.931 T -100.6 12.6 149.0 0.931 0.0 HOH
 2.763
 OD1
 O
ASN C:81 C:76 147.0 0.919 T -107.7 0.4 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 ASN A:81 A:76 142.0 0.887 T -86.4 5.7 142.0 0.887 0.0 HOH
 2.611
 OD1
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 ASN A:86 A:76 131.0 0.819 T -100.0 -22.1 131.0 0.819 0.0 HOH
 2.623
 HD22
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 ASN A:76 A:76 144.0 0.9 T -89.2 1.5 144.0 0.9 0.0 HOH
 6.727
 O
 O
ASN B:76 B:76 155.0 0.969 T -60.4 -36.9 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 ASN A:76 A:76 152.0 0.95 T -79.0 -13.0 152.0 0.95 0.0 HOH
 9.339
 C
 O
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 ASN A:76 A:76 103.0 NA T -81.0 -21.6 103.0 NA NA
ASN B:76 B:76 143.0 0.894 T -77.1 -3.8 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 ASN A:76 A:76 161.0 1.0 T -73.8 -23.1 161.0 1.0 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 ASN A:76 A:76 146.0 0.912 T -95.7 8.1 146.0 0.912 0.0 HOH
 7.137
 OD1
 O
ASN B:76 B:76 161.0 1.0 T -79.0 -21.2 NA NA NA
ASN C:76 C:76 135.0 0.844 T -75.5 -9.5 NA NA NA
ASN D:76 D:76 144.0 0.9 T -96.9 3.5 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 ASN B:81 B:76 137.0 0.856 T -85.6 6.7 42.0 0.263 0.593 A:Q9Y4P1:0.594
 HOH
 3.413
 O
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 ASN B:81 B:76 163.0 1.0 T -72.8 -17.7 63.0 0.394 0.606 A:Q9Y4P1:0.625
 HOH
 3.178
 OD1
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 ASN A:75 A:76 150.0 0.938 T -92.6 -15.3 150.0 0.938 0.0 HOH
 2.374
 OD1
 O
ASN B:75 B:76 146.0 0.912 T -90.3 -26.2 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 ASN A:77 A:76 148.0 0.925 S -92.3 -34.6 148.0 0.925 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 ASN A:86 A:76 138.0 0.863 T -80.4 -14.6 138.0 0.863 0.0 HOH
 1.897
 ND2
 O
ASN B:86 B:76 146.0 0.912 T -85.5 -0.9 65.0 0.406 0.506 D:Q9GZQ8:0.506
 HOH
 2.657
 ND2
 O
ASN C:86 NA:NA DO NA DO DO DO NA NA NA
ASN D:86 D:76 151.0 0.944 T -69.7 -7.2 151.0 0.944 0.0 HOH
 3.521
 O
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 ASN A:98 A:74 137.0 0.856 T -74.0 -28.0 9.0 0.056 0.8 C:Q9GZQ8:0.8
 HOH
 2.612
 O
 O
ASN B:98 B:74 137.0 0.856 T -72.5 -26.3 137.0 0.856 0.0 HOH
 3.003
 OD1
 O
ASN C:98 C:74 142.0 0.887 T -63.2 -47.6 142.0 0.887 0.0 HOH
 5.721
 CG
 O
ASN D:98 D:74 146.0 0.912 S -49.4 -56.9 146.0 0.912 0.0 HOH
 5.453
 O
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 ASN A:81 A:76 149.0 0.931 T -90.3 -23.6 149.0 0.931 0.0 HOH
 6.788
 O
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 ASN B:81 B:76 151.0 0.944 T -72.4 -14.2 49.0 0.306 0.638 A:Q9Y4P1:0.637
 HOH
 2.767
 OD1
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 ASN B:81 B:76 146.0 0.912 -103.7 -3.8 56.0 0.35 0.562 A:Q5ZUV9:0.562
 HOH
 2.030
 OD1
 O
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 ASN A:89 A:1076 149.0 0.931 T -89.5 -3.9 149.0 0.931 0.0 HOH
 3.668
 O
 O
ASN B:89 B:1076 137.0 0.856 T -93.9 -4.5 137.0 0.856 0.0 HOH
 2.750
 O
 O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 ASN A:106 A:91 156.0 0.975 T -82.8 -20.6 156.0 0.975 0.0 HOH
 2.759
 O
 O
ASN B:106 B:91 131.0 0.819 T -88.4 -20.5 NA NA NA
ASN C:106 C:91 155.0 0.969 T -94.4 -7.2 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 ASN A:91 A:92 137.0 0.856 T -108.1 3.9 137.0 0.856 0.0
ASN B:91 B:92 128.0 0.8 T -77.5 -29.6 NA NA NA
ASN C:91 C:92 140.0 0.875 T -84.4 -25.8 NA NA NA
ASN D:91 D:92 132.0 0.825 T -111.8 1.6 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 ASN A:91 A:103 150.0 0.938 T -94.6 -1.0 150.0 0.938 0.0 HOH
 2.913
 OD1
 O
ASN B:91 B:103 137.0 0.856 T -92.6 -5.4 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 ASN A:91 A:91 155.0 0.969 T -76.0 -5.4 155.0 0.969 0.0 HOH
 2.619
 O
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 ASN A:91 A:92 150.0 0.938 T -90.5 -8.2 150.0 0.938 0.0 HOH
 2.813
 ND2
 O
ASN B:91 B:92 144.0 0.9 T -86.4 -13.4 144.0 0.9 0.0 HOH
 3.831
 O
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 ASN A:83 A:76 147.0 0.919 S -86.9 -36.4 147.0 0.919 0.0 HOH
 3.801
 ND2
 O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 ASN A:80 A:80 158.0 0.988 T -76.8 -10.6 158.0 0.988 0.0 HOH
 2.709
 O
 O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 ASN A:80 A:80 142.0 0.887 T -88.3 7.1 142.0 0.887 0.0 HOH
 3.105
 O
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 ASN A:94 A:76 152.0 0.95 T -91.2 -4.8 152.0 0.95 0.0 HOH
 3.822
 O
 O
ASN B:94 B:76 154.0 0.963 T -91.6 -4.7 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 ASN A:94 A:76 163.0 1.0 T -94.7 -4.2 163.0 1.0 0.0 HOH
 3.049
 O
 O
ASN B:94 B:76 165.0 1.0 T -94.6 -2.2 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 ASN A:76 A:76 133.0 0.831 S -79.4 -14.9 133.0 0.831 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 ASN B:73 C:76 135.0 0.844 S -71.8 -40.2 135.0 0.844 0.0
ASN C:73 D:76 129.0 0.806 S -71.7 -44.6 129.0 0.806 0.0
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 THR A:78 A:76 127.0 0.907 T -91.8 -17.6 127.0 0.907 0.0 HOH
 3.629
 O
 O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 THR A:78 A:76 125.0 0.893 S -87.1 -36.5 125.0 0.893 0.0 HOH
 6.641
 O
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 THR A:78 A:76 128.0 0.914 T -85.1 -12.2 128.0 0.914 0.0 HOH
 3.507
 O
 O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 THR A:76 A:76 115.0 0.821 T -75.5 -24.3 115.0 0.821 0.0 HOH
 7.586
 OG1
 O
THR B:76 B:76 125.0 0.893 T -79.1 -25.0 NA NA NA
THR C:76 C:76 128.0 0.914 T -76.5 -22.1 128.0 0.914 0.0 HOH
 9.687
 O
 O
THR D:76 D:76 124.0 0.886 T -79.7 -27.5 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 THR A:77 A:76 122.0 0.871 T -53.9 -33.7 122.0 0.871 0.0
THR B:77 B:76 82.0 NA T -66.7 -28.0 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 THR A:80 A:80 126.0 0.9 T -80.7 -35.0 126.0 0.9 0.0 HOH
 2.759
 O
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 THR A:91 A:87 124.0 0.886 T -78.1 -23.7 124.0 0.886 0.0 HOH
 3.756
 HG23
 O
THR B:91 B:87 132.0 0.943 T -81.3 -22.4 NA NA NA
THR C:91 C:87 126.0 0.9 T -78.5 -21.3 NA NA NA
THR D:91 D:87 128.0 0.914 T -79.8 -21.4 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 THR A:91 A:92 136.0 0.971 T -77.3 -1.4 82.0 0.586 0.385 B:O75143+Q9H492:0.386
 HOH
 2.448
 O
 O
THR B:91 B:92 124.0 0.886 T -96.7 -15.1 91.0 0.65 0.236 A:O75143+Q9H492:0.236
 HOH
 3.118
 O
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 THR A:88 A:76 137.0 0.979 T -86.2 -0.0 137.0 0.979 0.0 HOH
 2.690
 OG1
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 THR A:76 A:80 120.0 0.857 T -94.1 -10.1 120.0 0.857 0.0 HOH
 4.077
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 ASN A:76 A:76 162.0 1.0 T -79.7 -10.0
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 ASN A:76 A:76 161.0 1.0 T -80.1 -10.6
af-q9h492-f1 1 Q9H492 82.5 1e-72 THR A:76 A:76 132.0 0.943 T -83.3 -14.6