Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87436579 . G A CCDS10960.1:NM_022818.4:c.254gGa>gAa_NP_073729.1:p.85G>E Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 GLY A:85 B:85 47.0 0.627 T 75.0 -30.6 47.0 0.627 0.0 HOH
 2.458
 O
 O
GLY C:85 A:85 58.0 0.773 T 83.8 -23.1 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 GLY A:90 A:85 25.0 0.333 T -115.8 51.8 25.0 0.333 0.0 HOH
 2.784
 O
 O
GLY C:90 C:85 70.0 0.933 T 75.8 -11.5 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 GLY A:90 A:85 73.0 0.973 T 84.3 10.2 73.0 0.973 0.0 HOH
 2.665
 O
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 GLY A:95 A:85 60.0 0.8 T 79.2 -18.3 60.0 0.8 0.0 HOH
 1.998
 H
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 GLY A:85 A:85 34.0 0.453 T 74.4 -3.2 34.0 0.453 0.0 GOL
HOH
 8.976
4.514
 N
O
 O3
O
GLY B:85 B:85 24.0 0.32 T 86.2 -14.1 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 GLY A:85 A:85 65.0 0.867 T 75.8 5.0 65.0 0.867 0.0 ZN
HOH
 7.588
2.902
 C
N
 ZN
O
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 GLY A:85 A:85 40.0 0.533 T 75.8 -4.2 40.0 0.533 0.0 GOL
HOH
 8.954
6.364
 C
N
 C3
O
GLY B:85 B:85 47.0 0.627 T 71.0 8.6 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 GLY A:85 A:85 34.0 0.453 T 83.0 2.0 34.0 0.453 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 GLY A:85 A:85 16.0 0.213 T 79.7 1.2 16.0 0.213 0.0 HOH
 3.234
 N
 O
GLY B:85 B:85 16.0 0.213 T 76.4 4.8 NA NA NA
GLY C:85 C:85 10.0 0.133 T 84.6 -4.7 NA NA NA
GLY D:85 D:85 20.0 0.267 T 84.6 -3.1 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 GLY B:90 B:85 67.0 0.893 T 79.5 3.4 28.0 0.373 0.52 A:Q9Y4P1:0.52
 HOH
 2.815
 N
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 GLY B:90 B:85 67.0 0.893 T 93.1 -7.9 21.0 0.28 0.613 A:Q9Y4P1:0.613
 HOH
 3.018
 N
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 GLY A:84 A:85 47.0 0.627 S 66.5 93.5 47.0 0.627 0.0 HOH
 2.625
 N
 O
GLY B:84 B:85 72.0 0.96 T -118.8 58.0 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 GLY A:86 A:85 41.0 0.547 T 102.2 5.6 41.0 0.547 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 GLY A:95 A:85 44.0 0.587 T 85.5 6.5 44.0 0.587 0.0 HOH
 2.435
 N
 O
GLY B:95 NA:NA DO NA DO DO DO NA NA NA
GLY C:95 C:85 26.0 0.347 T 87.3 -3.6 26.0 0.347 0.0 HOH
 3.734
 O
 O
GLY D:95 D:85 29.0 0.387 T 76.4 -4.2 29.0 0.387 0.0 HOH
 5.341
 N
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 GLY A:107 A:83 56.0 0.747 T 79.8 1.2 56.0 0.747 0.0 HOH
 3.178
 N
 O
GLY B:107 B:83 64.0 0.853 T 76.7 -3.1 64.0 0.853 0.0 HOH
 3.090
 N
 O
GLY C:107 C:83 67.0 0.893 T 83.2 -3.2 16.0 0.213 0.68 A:Q9GZQ8:0.68
 HOH
 2.870
 O
 O
GLY D:107 D:83 67.0 0.893 T 81.3 -1.3 67.0 0.893 0.0 HOH
 5.277
 N
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 GLY A:90 A:85 63.0 0.84 T 85.6 -10.6 63.0 0.84 0.0 HOH
 2.593
 O
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 GLY B:90 B:85 66.0 0.88 T 84.2 3.0 30.0 0.4 0.48 A:Q9Y4P1:0.48
 HOH
 2.670
 O
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 GLY B:90 B:85 61.0 0.813 T -107.4 8.6 61.0 0.813 0.0 HOH
 7.913
 O
 O
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 GLY A:98 A:1085 38.0 0.507 T 91.9 -5.1 38.0 0.507 0.0 GOL
HOH
 8.455
2.790
 C
N
 O1
O
GLY B:98 B:1085 49.0 0.653 T 87.4 -4.9 49.0 0.653 0.0 GOL
HOH
 9.289
2.939
 C
N
 O2
O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 GLY A:115 A:100 68.0 0.907 T 80.2 -17.2 68.0 0.907 0.0 HOH
 5.493
 N
 O
GLY B:115 B:100 51.0 0.68 T 78.2 -15.2 NA NA NA
GLY C:115 C:100 51.0 0.68 T 110.9 -53.1 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 GLY A:100 A:101 61.0 0.813 T 77.5 25.1 61.0 0.813 0.0
GLY B:100 B:101 44.0 0.587 T 66.3 21.4 NA NA NA
GLY C:100 C:101 48.0 0.64 T 72.5 16.1 NA NA NA
GLY D:100 D:101 72.0 0.96 T 102.1 -22.7 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 GLY A:100 A:112 45.0 0.6 T 78.4 -2.4 45.0 0.6 0.0 HOH
 5.615
 N
 O
GLY B:100 B:112 47.0 0.627 T 79.5 -5.4 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 GLY A:100 A:100 80.0 1.0 T 80.0 15.2 80.0 1.0 0.0 HOH
 2.516
 O
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 GLY A:100 A:101 39.0 0.52 T 80.8 2.1 39.0 0.52 0.0 HOH
 2.837
 N
 O
GLY B:100 B:101 40.0 0.533 T 69.3 13.9 40.0 0.533 0.0 HOH
 2.797
 N
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 GLY A:92 A:85 63.0 0.84 T 74.4 3.0 63.0 0.84 0.0 SO4
HOH
 9.151
2.996
 N
N
 O1
O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 GLY A:89 A:89 78.0 1.0 T 81.6 7.8 78.0 1.0 0.0 HOH
 2.543
 O
 O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 GLY A:89 A:89 76.0 1.0 T 80.4 16.8 76.0 1.0 0.0 HOH
 2.577
 O
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 GLY A:103 A:85 45.0 0.6 T 87.6 -0.4 45.0 0.6 0.0 HOH
 2.807
 N
 O
GLY B:103 B:85 43.0 0.573 T 86.4 -0.3 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 GLY A:103 A:85 57.0 0.76 T 81.9 2.7 57.0 0.76 0.0 HOH
 2.604
 N
 O
GLY B:103 B:85 45.0 0.6 T 80.1 0.7 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 GLY A:85 A:85 33.0 0.44 T 119.5 6.4 33.0 0.44 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 GLY B:82 C:85 61.0 0.813 T 85.7 21.1 61.0 0.813 0.0
GLY C:82 D:85 50.0 0.667 T 85.5 20.4 50.0 0.667 0.0
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 GLN A:87 A:85 147.0 0.817 T 79.2 0.8 147.0 0.817 0.0 HOH
 2.641
 OE1
 O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 GLN A:87 A:85 144.0 0.8 T 66.2 13.5 144.0 0.8 0.0 HOH
 2.920
 N
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 GLN A:87 A:85 158.0 0.878 T 72.6 12.3 158.0 0.878 0.0 2JI
HOH
 6.793
2.880
 O
N
 O17
O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 GLN A:85 A:85 126.0 0.7 T -80.6 -48.7 126.0 0.7 0.0 HOH
 4.183
 NE2
 O
GLN B:85 B:85 125.0 0.694 T -77.9 -47.0 NA NA NA
GLN C:85 C:85 99.0 0.55 T -77.3 -44.8 99.0 0.55 0.0 HOH
 7.069
 N
 O
GLN D:85 D:85 126.0 0.7 T -76.3 -44.3 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 GLN A:86 A:85 76.0 NA T -88.9 47.2 76.0 NA NA
GLN B:86 B:85 143.0 0.794 T -95.9 59.4 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 GLN A:89 A:89 172.0 0.956 T 69.7 11.6 172.0 0.956 0.0 HOH
 3.092
 N
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 GLN A:100 A:96 132.0 0.733 S 70.1 27.7 132.0 0.733 0.0 HOH
 8.098
 H
 O
GLN B:100 B:96 132.0 0.733 T 65.2 23.1 NA NA NA
GLN C:100 C:96 133.0 0.739 T 65.5 22.7 NA NA NA
GLN D:100 D:96 156.0 0.867 S 73.5 27.0 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 GLN A:100 A:101 135.0 0.75 T -90.9 67.5 135.0 0.75 0.0 HOH
 4.143
 C
 O
GLN B:100 B:101 130.0 0.722 T 59.8 32.3 107.0 0.594 0.128 A:O75143+Q9H492:0.128
 HOH
 2.700
 OE1
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 GLN A:97 A:85 153.0 0.85 T 54.5 14.2 153.0 0.85 0.0 HOH
 2.869
 N
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 GLN A:85 A:89 177.0 0.983 T 76.3 3.7 177.0 0.983 0.0 HOH
 2.878
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 GLY A:85 A:85 14.0 0.187 T 81.6 -0.5
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 GLY A:85 A:85 18.0 0.24 T 79.7 3.5
af-q9h492-f1 1 Q9H492 82.5 1e-72 GLN A:85 A:85 106.0 0.589 T 66.7 1.7