Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 87436596 . G A CCDS10960.1:NM_022818.4:c.271Gtc>Atc_NP_073729.1:p.91V>I Homo sapiens microtubule associated protein 1 light chain 3 beta (MAP1LC3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5gmv 1 Q9GZQ8 100.0 1e-89 X-RAY
 2017-03-08 VAL A:91 B:91 82.0 0.529 T -68.7 -26.6 82.0 0.529 0.0 HOH
 5.866
 CG1
 O
VAL C:91 A:91 78.0 0.503 T -65.8 -20.1 NA NA NA
2zjd 1 Q9GZQ8 100.0 1e-89 X-RAY
 2008-06-03 VAL A:96 A:91 79.0 0.51 T -62.5 -21.5 79.0 0.51 0.0 HOH
 3.019
 N
 O
VAL C:96 C:91 82.0 0.529 T -65.4 -18.1 NA NA NA
5d94 1 Q9GZQ8 100.0 1e-89 X-RAY
 2015-10-21 VAL A:96 A:91 71.0 0.458 T -70.3 -19.9 71.0 0.458 0.0 HOH
 3.675
 CG1
 O
6lan 1 Q8IVM0,Q9GZQ8 99.2 1e-88 X-RAY
 2020-09-30 VAL A:101 A:91 72.0 0.465 T -68.0 -13.7 72.0 0.465 0.0 HOH
 2.667
 HG22
 O
5wrd 1 Q9CQV6 95.2 2e-86 X-RAY
 2017-03-29 VAL A:91 A:91 77.0 0.497 T -59.7 -24.6 77.0 0.497 0.0 GOL
HOH
 4.215
3.007
 CG1
N
 C1
O
VAL B:91 B:91 81.0 0.523 T -64.6 -19.7 NA NA NA
5yiq 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 VAL A:91 A:91 86.0 0.555 T -67.7 -20.9 86.0 0.555 0.0
5yis 1 Q9CQV6 95.2 2e-86 X-RAY
 2018-05-23 VAL A:91 A:91 80.0 0.516 T -65.7 -23.6 50.0 0.323 0.193 D:Q01484:0.194
 GOL
 4.023
 CG1
 C1
VAL B:91 B:91 82.0 0.529 T -67.1 -16.1 NA NA NA
2n9x 1 Q9GZQ8 100.0 3e-86 NMR
 2016-12-14 VAL A:91 A:91 53.0 0.342 -83.7 137.4 53.0 0.342 0.0
6j04 1 Q9GZQ8 99.19 6e-86 X-RAY
 2019-11-06 VAL A:91 A:91 81.0 0.523 T -63.5 -20.2 57.0 0.368 0.155 C:Q9GZQ8:0.155
 HOH
 2.922
 N
 O
VAL B:91 B:91 82.0 0.529 T -66.3 -23.7 NA NA NA
VAL C:91 C:91 75.0 0.484 T -61.0 -29.0 NA NA NA
VAL D:91 D:91 68.0 0.439 T -68.4 -17.8 NA NA NA
2z0e 2 Q62625 95.97 6e-86 X-RAY
 2007-05-22 VAL B:96 B:91 72.0 0.465 T -85.3 -6.9 15.0 0.097 0.368 A:Q9Y4P1:0.368
 HOH
 5.816
 CG1
 O
2zzp 2 Q62625 95.97 6e-86 X-RAY
 2009-03-03 VAL B:96 B:91 55.0 0.355 S -135.2 -180.0 9.0 0.058 0.297 A:Q9Y4P1:0.297
 HOH
 5.985
 N
 O
5xad 1 Q9GZQ8 100.0 2e-85 X-RAY
 2017-07-12 VAL A:90 A:91 68.0 0.439 S -106.8 -5.3 68.0 0.439 0.0 HOH
 2.998
 O
 O
VAL B:90 B:91 67.0 0.432 T -70.0 -1.8 NA NA NA
2k6q 1 Q62625 98.33 3e-85 NMR
 2008-09-02 VAL A:92 A:91 52.0 0.335 -107.5 89.6 52.0 0.335 0.0
5xac 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 VAL A:101 A:91 66.0 0.426 S -99.3 9.0 66.0 0.426 0.0 HOH
 3.559
 C
 O
VAL B:101 B:91 73.0 0.471 T -79.3 -7.5 16.0 0.103 0.368 D:Q9GZQ8:0.368
 HOH
 3.110
 N
 O
VAL C:101 C:91 77.0 0.497 T -69.7 -9.7 77.0 0.497 0.0 HOH
 2.950
 N
 O
VAL D:101 D:91 75.0 0.484 T -61.6 -18.9 75.0 0.484 0.0 HOH
 3.687
 CG1
 O
5xae 1 Q9GZQ8 100.0 4e-85 X-RAY
 2017-07-12 VAL A:113 A:89 120.0 0.774 360.0 147.1 120.0 0.774 0.0 HOH
 6.353
 N
 O
VAL B:113 NA:NA DO NA DO DO DO NA NA NA
VAL C:113 C:89 46.0 0.297 -60.1 -68.3 46.0 0.297 0.0 HOH
 2.264
 N
 O
VAL D:113 D:89 48.0 0.31 -76.5 -71.3 48.0 0.31 0.0 HOH
 7.323
 CG2
 O
1ugm 1 Q62625 98.33 5e-85 X-RAY
 2004-07-06 VAL A:96 A:91 57.0 0.368 S -92.7 -8.0 57.0 0.368 0.0 HOH
 5.301
 CG1
 O
2z0d 2 Q62625 98.33 5e-85 X-RAY
 2007-05-22 VAL B:96 B:91 78.0 0.503 T -75.0 -14.7 15.0 0.097 0.406 A:Q9Y4P1:0.406
 HOH
 3.210
 CG1
 O
5ms2 2 Q9GZQ8 100.0 6e-85 X-RAY
 2017-04-19 VAL B:96 B:91 74.0 0.477 T -90.7 -6.7 24.0 0.155 0.322 A:Q5ZUV9:0.323
 HOH
 5.302
 CG2
 O
5v4k 1 Q9GZQ8 100.0 2e-84 X-RAY
 2017-05-17 VAL A:104 A:1091 62.0 0.4 S -102.2 -2.3 62.0 0.4 0.0 GOL
HOH
 6.456
3.416
 N
N
 O3
O
VAL B:104 B:1091 61.0 0.394 T -92.6 -2.5 61.0 0.394 0.0 GOL
HOH
 5.964
3.164
 N
C
 O3
O
3vtw 1 Q96CV9,Q9GZQ8 100.0 3e-84 X-RAY
 2013-06-26 VAL A:121 A:106 29.0 0.187 -149.8 122.9 29.0 0.187 0.0 HOH
 4.576
 N
 O
VAL B:121 B:106 84.0 0.542 T -14.7 143.2 NA NA NA
VAL C:121 C:106 46.0 0.297 -107.3 -48.3 NA NA NA
3wao 1 O75143,Q9GZQ8 100.0 3e-84 X-RAY
 2013-12-25 VAL A:106 A:107 29.0 0.187 -106.3 123.1 29.0 0.187 0.0
VAL B:106 B:107 54.0 0.348 -114.6 109.8 NA NA NA
VAL C:106 C:107 55.0 0.355 -129.0 99.6 NA NA NA
VAL D:106 D:107 80.0 0.516 -82.8 95.8 NA NA NA
3x0w 1 Q9GZQ8 100.0 5e-84 X-RAY
 2015-01-14 VAL A:106 A:118 55.0 0.355 S -119.4 -0.1 55.0 0.355 0.0 HOH
 6.065
 CG1
 O
VAL B:106 B:118 59.0 0.381 S -119.9 2.2 NA NA NA
3vtv 1 Q96CV9,Q9GZQ8 100.0 5e-84 X-RAY
 2013-06-26 VAL A:106 A:106 35.0 0.226 -67.3 129.7 35.0 0.226 0.0 HOH
 2.053
 O
 O
4waa 1 Q9GZQ8 100.0 6e-84 X-RAY
 2015-09-09 VAL A:106 A:107 67.0 0.432 -117.2 -3.1 67.0 0.432 0.0 HOH
 3.096
 C
 O
VAL B:106 B:107 61.0 0.394 S -102.8 2.7 61.0 0.394 0.0 HOH
 2.940
 O
 O
5dcn 1 Q9GZQ8 100.0 6e-84 X-RAY
 2016-03-09 VAL A:98 A:91 69.0 0.445 T -62.1 -19.0 69.0 0.445 0.0 HOH
 4.020
 N
 O
3vtu 1 Q9GZQ8 99.16 7e-84 X-RAY
 2013-06-26 VAL A:95 A:95 43.0 0.277 T -66.3 -46.1 43.0 0.277 0.0 HOH
 2.726
 O
 O
7elg 1 Q9GZQ8 99.16 7e-84 X-RAY
 2021-10-13 VAL A:95 A:95 50.0 0.323 -122.5 158.7 50.0 0.323 0.0 HOH
 2.499
 O
 O
5ms5 1 Q5ZUV9,Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 VAL A:109 A:91 52.0 0.335 -101.1 -4.2 52.0 0.335 0.0 HOH
 3.143
 N
 O
VAL B:109 B:91 47.0 0.303 -101.0 -6.2 NA NA NA
5ms6 1 Q9GZQ8 100.0 9e-84 X-RAY
 2017-04-19 VAL A:109 A:91 50.0 0.323 -101.1 -6.7 50.0 0.323 0.0 HOH
 3.233
 C
 O
VAL B:109 B:91 54.0 0.348 S -99.7 -5.5 NA NA NA
2lue 1 Q9GZQ8 100.0 7e-82 NMR
 2013-07-17 VAL A:91 A:91 78.0 0.503 T -62.0 -20.7 78.0 0.503 0.0
5w9a 2 Q9GZQ8 100.0 7e-81 X-RAY
 2018-10-10 VAL B:88 C:91 69.0 0.445 T -58.1 -25.8 69.0 0.445 0.0
VAL C:88 D:91 74.0 0.477 T -59.7 -26.9 74.0 0.477 0.0
7r9w 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 VAL A:93 A:91 38.0 0.245 -90.5 90.4 38.0 0.245 0.0 HOH
 6.246
 O
 O
7r9z 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 VAL A:93 A:91 33.0 0.213 -83.7 93.0 33.0 0.213 0.0 HOH
 4.097
 CG2
 O
7ra0 1 Q9H492 82.5 3e-72 X-RAY
 2022-01-12 VAL A:93 A:91 39.0 0.252 -89.8 87.6 39.0 0.252 0.0 2JI
HOH
 3.508
3.839
 CG1
CG1
 N11
O
5cx3 1 Q9H492 82.5 4e-72 X-RAY
 2016-08-03 VAL A:91 A:91 71.0 0.458 T -68.5 -21.8 25.0 0.161 0.297 C:Q9H492:0.297
 HOH
 3.633
 N
 O
VAL B:91 B:91 80.0 0.516 T -65.8 -20.2 NA NA NA
VAL C:91 C:91 62.0 0.4 T -70.8 -15.9 18.0 0.116 0.284 A:Q9H492:0.284
 HOH
 3.484
 CG1
 O
VAL D:91 D:91 67.0 0.432 T -69.3 -19.9 NA NA NA
3eci 1 Q9H492 82.5 5e-72 X-RAY
 2008-10-14 VAL A:92 A:91 84.0 0.542 T -71.1 -24.7 84.0 0.542 0.0
VAL B:92 B:91 75.0 0.484 S -81.0 -44.6 NA NA NA
3wal 1 Q9H492 80.99 4e-71 X-RAY
 2013-12-25 VAL A:95 A:95 32.0 0.206 -91.2 103.1 32.0 0.206 0.0 HOH
 3.554
 CG1
 O
5dpr 1 Q9Y4G2,Q9H492 81.67 5e-71 X-RAY
 2016-09-28 VAL A:106 A:102 33.0 0.213 -92.4 120.1 33.0 0.213 0.0 HOH
 6.829
 H
 O
VAL B:106 B:102 72.0 0.465 S -91.7 -11.4 NA NA NA
VAL C:106 C:102 78.0 0.503 S -90.9 -21.8 NA NA NA
VAL D:106 D:102 42.0 0.271 -98.1 127.3 NA NA NA
3wan 1 O75143,Q9H492 81.67 5e-71 X-RAY
 2013-12-25 VAL A:106 A:107 93.0 0.6 S -93.0 -0.6 21.0 0.135 0.465 B:O75143+Q9H492:0.465
 HOH
 2.825
 N
 O
VAL B:106 B:107 50.0 0.323 -65.6 121.2 50.0 0.323 0.0 HOH
 2.791
 O
 O
4zdv 1 Q9H492 82.35 6e-71 X-RAY
 2015-06-03 VAL A:103 A:91 39.0 0.252 -78.0 121.2 39.0 0.252 0.0 HOH
 3.471
 CA
 O
6tbe 1 Q9H492 81.9 1e-68 X-RAY
 2020-11-18 VAL A:91 A:95 41.0 0.265 -92.2 88.3 41.0 0.265 0.0 HOH
 3.692
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzq8-f1 1 Q9GZQ8 100.0 4e-90 VAL A:91 A:91 80.0 0.516 T -62.7 -19.7
af-a6nce7-f1 1 A6NCE7 99.2 5e-89 VAL A:91 A:91 78.0 0.503 T -64.0 -18.2
af-q9h492-f1 1 Q9H492 82.5 1e-72 VAL A:91 A:91 93.0 0.6 T -62.8 -19.6