Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 32583304 . G A CCDS11277.1:NM_002982.3:c.140aGg>aAg_NP_002973.1:p.47R>K Homo sapiens C-C motif chemokine ligand 2 (CCL2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zk9 2 P13500 100.0 6e-53 X-RAY
 2015-07-08 ARG B:24 B:24 156.0 0.693 G -74.2 -21.1 11.0 0.049 0.644 A:Q2F862:0.644
2bdn 1 P13500 100.0 1e-52 X-RAY
 2006-06-13 ARG A:24 A:24 134.0 0.596 G -106.8 -13.9 134.0 0.596 0.0 HOH
 2.664
 NH1
 O
3ifd 1 P13500 100.0 1e-52 X-RAY
 2009-08-04 ARG A:24 A:24 139.0 0.618 T -89.2 -6.9 139.0 0.618 0.0
1dok 1 P13500 100.0 2e-52 X-RAY
 1997-03-12 ARG A:25 A:24 143.0 0.636 G -88.5 -0.7 97.0 0.431 0.205 B:P13500:0.204
 HOH
 4.441
 CD
 O
ARG B:25 B:24 163.0 0.724 S -88.8 -12.6 163.0 0.724 0.0 HOH
 3.178
 O
 O
1dol 1 P13500 100.0 2e-52 X-RAY
 1997-03-12 ARG A:25 A:24 137.0 0.609 G -109.0 -9.0 137.0 0.609 0.0 HOH
 3.805
 CD
 O
4r8i 1 P13500 100.0 2e-52 X-RAY
 2015-04-29 ARG A:25 A:24 135.0 0.6 G -100.3 -0.1 135.0 0.6 0.0 0C
0G
0U
0C
0A
0A
0G
0U
0G
0A
0A
0G
HOH
 9.339
5.264
6.728
7.890
9.869
8.035
6.429
6.839
3.352
4.795
3.389
2.869
2.912
 NH2
NH2
N
N
NH1
NH1
NH1
CD
NH2
NH1
NH1
NH2
NH2
 O2
C8
OP1
N4
C2
N3
O4'
C5'
O6
O5'
OP1
O6
O
2nz1 2 P13500 98.68 9e-52 X-RAY
 2007-12-25 ARG C:24 D:24 149.0 0.662 S -122.5 8.8 81.0 0.36 0.302 B:O41925:0.302
 HOH
 3.743
 NE
 O
ARG D:24 E:24 125.0 0.556 G -90.9 -3.3 57.0 0.253 0.303 A:O41925:0.302
 HOH
 4.899
 NH2
 O
ARG F:24 Y:24 151.0 0.671 G -116.4 4.5 NA NA NA
4dn4 3 P13500 98.68 2e-51 X-RAY
 2012-10-03 ARG C:24 M:24 138.0 0.613 G -105.8 2.7 7.0 0.031 0.582 B:None:0.267
A:None:0.476
 HOH
 8.053
 NH2
 O
1ml0 2 P13500 97.37 1e-50 X-RAY
 2002-11-13 ARG B:24 D:24 140.0 0.622 G -127.0 9.8 72.0 0.32 0.302 A:O41925:0.302
 HOH
 4.639
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p13500-f1 1 P13500 100.0 2e-70 ARG A:47 A:47 167.0 0.742 G -92.6 -8.4