Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 34416577 . A C CCDS11307.1:NM_002983.2:c.140aTa>aGa_NP_002974.1:p.47I>R Homo sapiens C-C motif chemokine ligand 3 (CCL3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zkb 2 P10147 100.0 2e-47 X-RAY
 2015-07-08 ILE B:24 NA:NA DO NA DO DO DO NA NA NA
2x69 1 P10147 100.0 2e-47 X-RAY
 2010-11-03 ILE A:25 A:25 15.0 0.086 E -78.6 126.6 NA NA NA
ILE B:25 B:25 17.0 0.097 E -75.9 125.0 17.0 0.097 0.0
ILE C:25 C:25 17.0 0.097 E -74.3 116.9 17.0 0.097 0.0
ILE D:25 D:25 16.0 0.091 E -65.0 129.3 NA NA NA
ILE E:25 E:25 16.0 0.091 E -47.5 141.4 NA NA NA
3h44 2 P10147 100.0 2e-47 X-RAY
 2010-04-14 ILE C:25 NA:NA DO NA DO DO DO NA NA NA
ILE D:25 NA:NA DO NA DO DO DO NA NA NA
5cor 1 P10147 100.0 2e-47 X-RAY
 2016-04-13 ILE A:25 A:25 15.0 0.086 E -73.4 131.4 15.0 0.086 0.0 HOH
 4.519
 CB
 O
ILE B:25 B:25 17.0 0.097 E -69.1 130.8 NA NA NA
ILE C:25 C:25 18.0 0.103 E -71.9 125.1 18.0 0.103 0.0 HEZ
HEZ
HOH
 3.912
7.636
7.594
 CG2
CD1
C
 O1
C4
O
ILE D:25 D:25 15.0 0.086 E -67.6 127.8 NA NA NA
ILE E:25 E:25 15.0 0.086 E -73.4 127.9 15.0 0.086 0.0 HEZ
HEZ
HOH
 7.689
7.193
4.579
 CG1
CD1
CB
 O1
C4
O
ILE F:25 F:25 14.0 0.08 E -73.1 131.4 NA NA NA
ILE G:25 G:25 15.0 0.086 E -75.1 127.7 15.0 0.086 0.0 HOH
 4.539
 CG2
 O
ILE H:25 H:25 15.0 0.086 E -75.7 128.6 NA NA NA
ILE I:25 I:25 17.0 0.097 E -73.8 127.4 17.0 0.097 0.0 HOH
 6.998
 C
 O
ILE J:25 J:25 17.0 0.097 E -73.8 127.4 NA NA NA
5d65 1 P10147 100.0 2e-47 X-RAY
 2016-04-20 ILE A:25 A:25 13.0 0.074 E -71.9 125.7 13.0 0.074 0.0 BGC
 3.648
 O
 O5
ILE B:25 B:25 16.0 0.091 E -68.5 122.5 16.0 0.091 0.0 IDS
SGN
IDS
SGN
BGC
 4.513
3.998
9.665
8.023
9.513
 O
O
CG1
CG1
N
 C5
C3
O3
C3
O1
ILE C:25 C:25 12.0 0.069 E -74.5 131.5 12.0 0.069 0.0 BGC
 3.408
 O
 O4
ILE D:25 D:25 17.0 0.097 E -63.8 139.1 17.0 0.097 0.0 BGC
 9.633
 CD1
 O6
ILE E:25 E:25 19.0 0.109 E -67.5 135.8 19.0 0.109 0.0
3kbx 1 P10147 97.14 1e-46 X-RAY
 2010-10-27 ILE A:25 A:25 15.0 0.086 E -79.4 129.8 15.0 0.086 0.0
ILE B:25 B:25 11.0 0.063 E -69.2 135.3 NA NA NA
ILE C:25 C:25 12.0 0.069 E -75.5 128.6 NA NA NA
ILE D:25 D:25 15.0 0.086 E -70.3 132.5 NA NA NA
ILE E:25 E:25 15.0 0.086 E -84.6 137.8 NA NA NA
3fpu 2 P10147 98.55 3e-46 X-RAY
 2010-01-12 ILE B:25 B:25 13.0 0.074 E -102.5 128.6 13.0 0.074 0.0 HOH
 5.033
 CG2
 O
2x6g 1 P10147 98.57 3e-46 X-RAY
 2010-11-03 ILE A:25 A:25 10.0 0.057 E -96.2 131.5 NA NA NA
ILE B:25 B:25 11.0 0.063 E -82.7 127.1 NA NA NA
ILE C:25 C:25 15.0 0.086 E -77.2 117.6 NA NA NA
ILE D:25 D:25 13.0 0.074 E -91.7 124.9 NA NA NA
ILE E:25 E:25 12.0 0.069 E -95.7 130.2 NA NA NA
ILE F:25 F:25 15.0 0.086 E -84.8 130.9 NA NA NA
ILE G:25 G:25 12.0 0.069 E -101.8 132.9 NA NA NA
ILE H:25 H:25 11.0 0.063 E -98.1 120.7 NA NA NA
ILE I:25 I:25 10.0 0.057 E -98.4 130.6 NA NA NA
ILE J:25 J:25 13.0 0.074 E -73.6 116.7 NA NA NA
ILE K:25 K:25 14.0 0.08 E -80.7 142.6 NA NA NA
ILE L:25 L:25 21.0 0.12 E -111.5 125.8 NA NA NA
ILE M:25 M:25 14.0 0.08 E -78.8 122.2 NA NA NA
ILE N:25 N:25 17.0 0.097 E -93.5 128.1 NA NA NA
ILE O:25 O:25 12.0 0.069 E -95.8 122.2 NA NA NA
ILE P:25 P:25 13.0 0.074 E -89.5 123.1 NA NA NA
ILE Q:25 Q:25 16.0 0.091 E -66.5 133.1 16.0 0.091 0.0 HOH
 4.077
 CG2
 O
ILE R:25 R:25 10.0 0.057 E -94.8 128.4 10.0 0.057 0.0 HOH
 2.834
 O
 O
1b50 1 P10147 98.55 1e-45 NMR
 1999-07-22 ILE A:24 A:24 11.0 0.063 -65.4 165.8 11.0 0.063 0.0
ILE B:24 B:24 11.0 0.063 -65.4 165.9 11.0 0.063 0.0
1b53 1 P10147 98.55 1e-45 NMR
 1999-07-22 ILE A:24 A:24 9.0 0.051 -127.7 166.8 9.0 0.051 0.0
ILE B:24 B:24 9.0 0.051 -127.7 166.8 9.0 0.051 0.0
4ra8 1 P10147 98.55 1e-45 X-RAY
 2014-09-24 ILE A:25 A:25 14.0 0.08 E -74.5 127.0 14.0 0.08 0.0
ILE B:25 B:25 17.0 0.097 E -69.1 123.9 NA NA NA
ILE C:25 C:25 13.0 0.074 E -76.4 124.0 NA NA NA
ILE D:25 D:25 16.0 0.091 E -78.4 127.7 NA NA NA
ILE E:25 E:25 17.0 0.097 E -59.1 136.2 NA NA NA
7f1t 1 P10147,P51681,P00268 98.55 3e-43 X-RAY
 2021-07-14 ILE A:24 A:-72 11.0 0.063 E -101.3 119.4 11.0 0.063 0.0
7f1q 1 P10147,P51681 98.55 8e-43 EM
 2021-07-14 ILE A:24 R:24 11.0 0.063 -107.0 104.9 11.0 0.063 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10147-f1 1 P10147 100.0 3e-64 ILE A:47 A:47 13.0 0.074 E -78.4 137.7
af-p16619-f1 1 P16619 94.62 3e-59 ILE A:48 A:48 12.0 0.069 E -79.0 137.0