Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8925805 . G A CCDS11148.1:NM_004822.2:c.115Gat>Aat_NP_004813.2:p.39D>N Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 ASP A:17 A:39 50.0 0.333 -67.8 123.7 50.0 0.333 0.0 HOH
 2.876
 N
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ASP A:18 A:39 52.0 0.347 -68.4 127.5 52.0 0.347 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ASP A:18 A:39 49.0 0.327 -82.9 129.6 49.0 0.327 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 ASP A:15 A:39 53.0 0.353 -68.4 127.5 53.0 0.353 0.0
ASP F:15 G:39 50.0 0.333 -68.5 127.6 50.0 0.333 0.0
ASP I:15 D:39 52.0 0.347 -68.3 127.5 52.0 0.347 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 ASP A:1 A:39 114.0 0.76 360.0 101.2 114.0 0.76 0.0 GOL
 6.232
 OD2
 O1
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 ASP A:1 A:39 105.0 0.7 360.0 140.8 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASP A:16 A:41 63.0 0.42 -100.1 118.0 63.0 0.42 0.0 HOH
 3.134
 O
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASP A:16 A:41 59.0 0.393 -100.5 107.2 59.0 0.393 0.0
ASP B:16 B:41 66.0 0.44 -97.3 108.9 66.0 0.44 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASP B:16 A:41 57.0 0.38 -72.9 132.0 57.0 0.38 0.0 HOH
 5.973
 OD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 ASP A:39 A:39 44.0 0.293 -64.0 113.9