Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8925872 . G A CCDS11148.1:NM_004822.2:c.182gGc>gAc_NP_004813.2:p.61G>D Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 GLY A:39 A:61 50.0 0.667 T 67.2 -10.1 50.0 0.667 0.0 CA
HOH
 9.747
2.931
 N
O
 CA
O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 GLY A:40 A:61 59.0 0.787 T 64.8 11.5 59.0 0.787 0.0 CA
 9.736
 N
 CA
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 GLY A:40 A:61 64.0 0.853 T 67.3 22.1 64.0 0.853 0.0 CA
 9.598
 N
 CA
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 GLY A:37 A:61 61.0 0.813 T 64.8 11.6 61.0 0.813 0.0 CA
 9.737
 N
 CA
GLY F:37 G:61 59.0 0.787 T 64.7 11.6 59.0 0.787 0.0 CA
 9.736
 N
 CA
GLY I:37 D:61 61.0 0.813 T 64.9 11.6 61.0 0.813 0.0 CA
 9.735
 N
 CA
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 GLY A:23 A:61 51.0 0.68 T 64.2 1.7 51.0 0.68 0.0 CA
SO4
 9.571
4.148
 N
O
 CA
O2
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 GLY A:23 A:61 60.0 0.8 T 81.6 -3.3 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 GLY A:38 A:63 56.0 0.747 T 70.2 3.5 56.0 0.747 0.0 CA
HOH
 9.448
3.865
 N
O
 CA
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 GLY A:38 A:63 70.0 0.933 S -62.3 -25.8 70.0 0.933 0.0
GLY B:38 B:63 71.0 0.947 S -62.5 -25.6 71.0 0.947 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 GLY B:38 A:63 64.0 0.853 T -72.2 -48.3 64.0 0.853 0.0 HOH
 7.571
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 GLY A:61 A:61 61.0 0.813 T 65.3 18.2