Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8925908 . C A CCDS11148.1:NM_004822.2:c.218cCc>cAc_NP_004813.2:p.73P>H Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 PRO A:51 A:73 107.0 0.738 S -78.2 157.0 107.0 0.738 0.0 NAG
HOH
 7.378
2.589
 C
O
 C8
O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 PRO A:52 A:73 108.0 0.745 S -75.9 158.7 108.0 0.745 0.0 NAG
 7.169
 C
 C6
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 PRO A:52 A:73 110.0 0.759 S -76.9 167.5 110.0 0.759 0.0 NAG
 7.584
 C
 C8
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 PRO A:49 A:73 108.0 0.745 S -75.9 158.7 108.0 0.745 0.0 NAG
 7.168
 C
 C6
PRO F:49 G:73 110.0 0.759 S -76.0 158.7 110.0 0.759 0.0 NAG
 7.168
 C
 C6
PRO I:49 D:73 109.0 0.752 S -75.9 158.8 109.0 0.752 0.0 NAG
 7.168
 C
 C6
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 PRO A:35 A:73 110.0 0.759 S -73.2 164.7 110.0 0.759 0.0 NAG
 7.391
 C
 C8
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 PRO A:35 A:73 102.0 0.703 S -87.4 159.0 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 PRO A:50 A:75 108.0 0.745 S -75.0 160.9 108.0 0.745 0.0 NAG
HOH
 7.036
4.525
 C
N
 O7
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 PRO A:50 A:75 105.0 0.724 S -75.2 177.2 105.0 0.724 0.0 NAG
 7.474
 C
 O7
PRO B:50 B:75 95.0 0.655 S -83.5 162.0 95.0 0.655 0.0 NAG
 6.885
 C
 O7
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 PRO B:50 A:75 85.0 0.586 S -81.3 141.2 85.0 0.586 0.0 NAG
 6.948
 C
 C8

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 PRO A:73 A:73 107.0 0.738 S -74.1 167.5