Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8925985 . C A CCDS11148.1:NM_004822.2:c.295Ccc>Acc_NP_004813.2:p.99P>T Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 PRO A:77 A:99 103.0 0.71 T -66.2 -21.9 103.0 0.71 0.0 NAG
NAG
NAG
HOH
 5.932
9.414
8.273
4.001
 CD
CD
O
CD
 C6
C8
C8
O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 PRO A:78 A:99 105.0 0.724 T -64.3 -31.1 105.0 0.724 0.0 GU4
YYJ
NAG
NAG
 9.733
8.197
3.472
5.794
 C
C
O
CD
 O12
O1S3
O4
C8
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 PRO A:78 A:99 107.0 0.738 T -57.6 -25.8 107.0 0.738 0.0 GU4
NAG
NAG
 9.729
3.293
5.592
 C
O
CD
 O22
O4
O6
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 PRO A:75 A:99 106.0 0.731 T -64.3 -31.1 106.0 0.731 0.0 NAG
NAG
 3.471
5.795
 O
CD
 O4
C8
PRO F:75 G:99 107.0 0.738 T -64.3 -31.2 107.0 0.738 0.0 NAG
NAG
 3.472
5.794
 O
CD
 O4
C8
PRO I:75 D:99 105.0 0.724 T -64.1 -31.2 105.0 0.724 0.0 NAG
NAG
 3.471
5.794
 O
CD
 O4
C8
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 PRO A:61 A:99 111.0 0.766 G -57.2 -30.4 111.0 0.766 0.0 NAG
NAG
NAG
NAG
NAG
SO4
 4.785
8.288
6.712
4.231
7.563
8.246
 N
CD
O
O
CG
O
 O6
O7
O3
O7
O6
O3
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 PRO A:61 A:99 115.0 0.793 S -62.0 -28.1 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 PRO A:76 A:101 111.0 0.766 G -50.7 -46.1 111.0 0.766 0.0 NAG
NAG
CL
HOH
 5.733
8.140
9.045
4.050
 CD
O
O
O
 O6
C5
CL
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 PRO A:76 A:101 110.0 0.759 T -67.0 11.6 110.0 0.759 0.0 NAG
NAG
 6.166
3.208
 CD
O
 O6
O4
PRO B:76 B:101 113.0 0.779 T -24.9 -14.9 113.0 0.779 0.0 NAG
NAG
 5.520
3.278
 CD
O
 C6
O4
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 PRO B:76 A:101 107.0 0.738 T -73.6 -24.1 107.0 0.738 0.0 NAG
NAG
 5.307
3.566
 CD
O
 O6
O4

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 PRO A:99 A:99 114.0 0.786 T -54.3 -27.3