Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr17 | 8926074 | . | C | A | CCDS11148.1:NM_004822.2:c.384ttC>ttA_NP_004813.2:p.128F>L | Homo sapiens netrin 1 (NTN1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4ove | 1 | O09118 | 99.31 | 0.0 |
X-RAY |
2015-02-25 | PHE | A:106 | A:128 | 112.0 | 0.533 | S | -132.1 | 135.1 | 112.0 | 0.533 | 0.0 |
NAG HOH |
6.487 3.584 |
C CD1 |
C8 O |
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| 7ne0 | 1 | O95631 | 100.0 | 0.0 |
X-RAY |
2021-03-31 | PHE | A:107 | A:128 | 112.0 | 0.533 | T | -43.5 | 137.5 | 112.0 | 0.533 | 0.0 |
NAG |
8.224 |
CD2 |
N2 |
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| 7ne1 | 1 | O95631 | 100.0 | 0.0 |
X-RAY |
2021-03-31 | PHE | A:107 | A:128 | 96.0 | 0.457 | T | -45.1 | 138.2 | 96.0 | 0.457 | 0.0 |
NAG |
8.478 |
C |
O7 |
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| 7ndg | 1 | O95631 | 100.0 | 0.0 |
EM |
2021-03-31 | PHE | A:104 | A:128 | 110.0 | 0.524 | T | -43.6 | 137.5 | 110.0 | 0.524 | 0.0 |
NAG |
8.224 |
CD1 |
N2 |
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| PHE | F:104 | G:128 | 112.0 | 0.533 | T | -43.6 | 137.5 | 112.0 | 0.533 | 0.0 |
NAG |
8.225 |
CD1 |
N2 |
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| PHE | I:104 | D:128 | 111.0 | 0.529 | T | -43.5 | 137.5 | 111.0 | 0.529 | 0.0 |
NAG |
8.223 |
CD1 |
N2 |
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| 6fkq | 1 | O95631 | 100.0 | 0.0 |
X-RAY |
2018-03-21 | PHE | A:90 | A:128 | 92.0 | 0.438 | S | -169.6 | 150.4 | 92.0 | 0.438 | 0.0 |
NAG NAG |
6.468 7.544 |
C CZ |
C8 O6 |
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| 4urt | 1 | O95631 | 100.0 | 0.0 |
X-RAY |
2014-09-10 | PHE | A:90 | A:128 | 118.0 | 0.562 | S | -159.5 | 135.7 | NA | NA | NA | ||||||
| 4plm | 1 | Q90922 | 90.74 | 0.0 |
X-RAY |
2014-06-18 | TYR | A:105 | A:130 | 129.0 | 0.561 | S | -52.4 | 127.5 | 129.0 | 0.561 | 0.0 |
NAG HOH |
7.510 5.194 |
CE1 CE2 |
C6 O |
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| 4pln | 1 | Q90922 | 90.74 | 0.0 |
X-RAY |
2014-06-18 | TYR | A:105 | A:130 | 121.0 | 0.526 | T | -49.0 | 137.7 | 121.0 | 0.526 | 0.0 |
NAG |
6.289 |
CD1 |
O7 |
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| TYR | B:105 | B:130 | 121.0 | 0.526 | T | -48.4 | 137.4 | 121.0 | 0.526 | 0.0 |
NAG |
6.434 |
CD1 |
O7 |
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| 4plo | 2 | Q90922 | 90.74 | 0.0 |
X-RAY |
2014-06-18 | TYR | B:105 | A:130 | 115.0 | 0.5 | T | -49.9 | 145.3 | 115.0 | 0.5 | 0.0 |
NAG HOH |
5.518 3.674 |
CE1 CD1 |
C6 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o95631-f1 | 1 | O95631 | 100.0 | 0.0 | PHE | A:128 | A:128 | 126.0 | 0.6 | T | -48.4 | 135.5 | |