Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926238 . A C CCDS11148.1:NM_004822.2:c.548aAg>aCg_NP_004813.2:p.183K>T Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 LYS A:161 A:183 168.0 0.84 H -69.0 -45.7 168.0 0.84 0.0 NAG
HOH
 7.394
3.663
 O
O
 O7
O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 LYS A:162 A:183 144.0 0.72 H -64.8 -33.3 144.0 0.72 0.0 YYJ
 3.275
 NZ
 O2S6
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 LYS A:162 A:183 182.0 0.91 H -71.7 -19.6 182.0 0.91 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 LYS A:159 A:183 147.0 0.735 H -64.8 -33.4 147.0 0.735 0.0
LYS F:159 G:183 147.0 0.735 H -65.0 -33.2 147.0 0.735 0.0
LYS I:159 D:183 147.0 0.735 H -64.6 -33.4 147.0 0.735 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 LYS A:145 A:183 135.0 0.675 H -62.3 -36.6 135.0 0.675 0.0 NAG
NAG
 8.723
9.104
 O
O
 O6
C6
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 LYS A:145 A:183 174.0 0.87 H -87.9 -33.7 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 LYS A:160 A:185 155.0 0.775 H -65.0 -45.3 155.0 0.775 0.0 NAG
HOH
 9.658
4.097
 O
CB
 C6
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 LYS A:160 A:185 148.0 0.74 H -77.0 -19.3 148.0 0.74 0.0 NAG
 9.522
 O
 O7
LYS B:160 B:185 170.0 0.85 H -77.4 -20.0 170.0 0.85 0.0 NAG
 9.375
 O
 O7
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 LYS B:160 A:185 114.0 0.57 H -74.8 -54.1 114.0 0.57 0.0 NAG
SO4
HOH
 8.007
4.472
6.114
 O
N
N
 O6
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 LYS A:183 A:183 168.0 0.84 H -74.1 -41.8