Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926247 . A C CCDS11148.1:NM_004822.2:c.557aAc>aCc_NP_004813.2:p.186N>T Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 ASN A:164 A:186 115.0 0.719 S 42.5 63.6 115.0 0.719 0.0 NAG
NAG
HOH
 9.737
6.073
2.852
 N
CB
OD1
 O4
C8
O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ASN A:165 A:186 131.0 0.819 S 48.1 53.4 131.0 0.819 0.0 YYJ
 8.217
 C
 O2S1
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ASN A:165 A:186 123.0 0.769 S 53.2 46.4 123.0 0.769 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 ASN A:162 A:186 132.0 0.825 S 48.0 53.5 132.0 0.825 0.0
ASN F:162 G:186 133.0 0.831 S 48.1 53.3 133.0 0.831 0.0
ASN I:162 D:186 134.0 0.838 S 48.1 53.3 134.0 0.838 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 ASN A:148 A:186 140.0 0.875 S 44.9 47.5 140.0 0.875 0.0 NAG
NAG
 8.302
9.241
 N
CB
 O6
O3
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 ASN A:148 A:186 137.0 0.856 S 53.9 44.0 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASN A:163 A:188 114.0 0.713 S 58.0 63.9 114.0 0.713 0.0 NAG
HOH
 9.688
5.076
 N
OD1
 C6
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASN A:163 A:188 120.0 0.75 S 58.9 26.1 120.0 0.75 0.0 NAG
 9.502
 N
 O7
ASN B:163 B:188 119.0 0.744 S 57.8 29.1 119.0 0.744 0.0 NAG
 9.384
 N
 O7
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASN B:163 A:188 128.0 0.8 S 62.1 26.7 128.0 0.8 0.0 NAG
SO4
HOH
 8.192
7.748
6.344
 N
N
O
 O4
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 ASN A:186 A:186 112.0 0.7 S 55.5 31.9