Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926301 . C A CCDS11148.1:NM_004822.2:c.611aCc>aAc_NP_004813.2:p.204T>N Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 THR A:182 A:204 8.0 0.057 E -152.1 166.8 8.0 0.057 0.0 HOH
 4.686
 C
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 THR A:183 A:204 27.0 0.193 E -142.2 158.8 27.0 0.193 0.0 SO4
 9.184
 OG1
 O3
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 THR A:183 A:204 12.0 0.086 E -137.4 164.2 12.0 0.086 0.0 NO3
 9.084
 OG1
 O1
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 THR A:180 A:204 27.0 0.193 E -142.2 158.8 27.0 0.193 0.0
THR F:180 G:204 27.0 0.193 E -142.2 158.9 27.0 0.193 0.0
THR I:180 D:204 27.0 0.193 E -142.3 158.7 27.0 0.193 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 THR A:166 A:204 4.0 0.029 -160.5 144.3 4.0 0.029 0.0 SO4
 8.899
 OG1
 O3
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 THR A:166 A:204 21.0 0.15 E -122.1 154.8 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 THR A:181 A:206 9.0 0.064 E -124.2 156.1 9.0 0.064 0.0 CL
HOH
 8.948
4.548
 CG2
C
 CL
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 THR A:181 A:206 11.0 0.079 E -121.9 155.3 11.0 0.079 0.0
THR B:181 B:206 11.0 0.079 E -121.4 156.6 11.0 0.079 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 THR B:181 A:206 7.0 0.05 E -153.3 162.8 7.0 0.05 0.0 SO4
SO4
HOH
 9.164
6.112
6.745
 OG1
C
OG1
 O3
O4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 THR A:204 A:204 18.0 0.129 E -143.4 158.4