Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926318 . A C CCDS11148.1:NM_004822.2:c.628Atg>Ctg_NP_004813.2:p.210M>L Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 MET A:188 A:210 167.0 0.903 T 62.8 54.7 167.0 0.903 0.0 HOH
 5.473
 O
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 MET A:189 A:210 33.0 0.178 S -61.7 -33.9 33.0 0.178 0.0 SO4
 6.942
 N
 O1
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 MET A:189 A:210 15.0 0.081 S -59.3 -43.2 15.0 0.081 0.0 NO3
 7.179
 N
 O3
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 MET A:186 A:210 34.0 0.184 S -61.6 -34.0 34.0 0.184 0.0
MET F:186 G:210 33.0 0.178 S -61.8 -33.8 33.0 0.178 0.0
MET I:186 D:210 34.0 0.184 S -61.6 -34.0 34.0 0.184 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 MET A:172 A:210 18.0 0.097 S -50.1 -22.7 18.0 0.097 0.0 SO4
SO4
 7.093
4.428
 N
SD
 O4
O3
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 MET A:172 A:210 32.0 0.173 S -96.4 8.3 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 VAL A:187 A:212 35.0 0.226 -121.7 140.0 35.0 0.226 0.0 CL
HOH
 8.213
5.702
 N
CG1
 CL
O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 VAL A:187 A:212 28.0 0.181 -75.2 134.0 28.0 0.181 0.0
VAL B:187 B:212 23.0 0.148 S -64.5 -15.7 23.0 0.148 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 VAL B:187 A:212 23.0 0.148 S -60.8 -13.8 23.0 0.148 0.0 SO4
HOH
 7.382
6.002
 N
CB
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 MET A:210 A:210 38.0 0.205 -61.4 -33.2