Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926415 . T A CCDS11148.1:NM_004822.2:c.725gTc>gAc_NP_004813.2:p.242V>D Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 VAL A:220 A:242 4.0 0.026 T -84.9 -8.8 4.0 0.026 0.0 HOH
 5.755
 N
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 VAL A:221 A:242 4.0 0.026 S -72.7 -22.7 4.0 0.026 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 VAL A:221 A:242 2.0 0.013 S -72.1 -25.8 2.0 0.013 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 VAL A:218 A:242 3.0 0.019 S -72.6 -22.6 3.0 0.019 0.0
VAL F:218 G:242 3.0 0.019 S -72.6 -22.7 3.0 0.019 0.0
VAL I:218 D:242 3.0 0.019 S -72.7 -22.7 3.0 0.019 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 VAL A:204 A:242 2.0 0.013 T -75.9 -15.2 2.0 0.013 0.0
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 VAL A:204 A:242 4.0 0.026 T -83.3 -6.2 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 VAL A:219 A:244 4.0 0.026 T -80.9 1.8 4.0 0.026 0.0 HOH
 5.388
 CG2
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 VAL A:219 A:244 4.0 0.026 T -87.2 -0.0 4.0 0.026 0.0
VAL B:219 B:244 4.0 0.026 T -88.2 -1.4 4.0 0.026 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 VAL B:219 A:244 4.0 0.026 H -78.9 -24.8 4.0 0.026 0.0 HOH
 4.402
 CG1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 VAL A:242 A:242 4.0 0.026 T -75.2 -10.3