Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926475 . A C CCDS11148.1:NM_004822.2:c.785gAg>gCg_NP_004813.2:p.262E>A Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 GLU A:240 A:262 110.0 0.579 -105.5 103.7 110.0 0.579 0.0
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 GLU A:241 A:262 121.0 0.637 S -70.5 -177.8 121.0 0.637 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 GLU A:241 A:262 111.0 0.584 S -133.2 168.7 111.0 0.584 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 GLU A:238 A:262 121.0 0.637 S -70.4 -177.8 121.0 0.637 0.0
GLU F:238 G:262 120.0 0.632 S -70.5 -177.7 120.0 0.632 0.0
GLU I:238 D:262 120.0 0.632 S -70.6 -177.8 120.0 0.632 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 GLU A:224 A:262 180.0 0.947 S -77.3 -37.6 180.0 0.947 0.0
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 GLU A:224 A:262 124.0 0.653 S -68.3 -14.7 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 GLU A:239 A:264 98.0 NA 360.0 153.6 98.0 NA NA
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 GLU A:239 A:264 89.0 NA T -106.3 100.1 89.0 NA NA
GLU B:239 B:264 194.0 1.0 S -74.5 -35.3 194.0 1.0 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 GLU B:239 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 GLU A:262 A:262 125.0 0.658 S -85.1 159.9