Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926505 . A C CCDS11148.1:NM_004822.2:c.815tAc>tCc_NP_004813.2:p.272Y>S Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 TYR A:250 A:272 39.0 0.17 -97.6 68.7 39.0 0.17 0.0 HOH
 4.213
 CE1
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 TYR A:251 A:272 12.0 0.052 -124.4 112.9 12.0 0.052 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 TYR A:251 A:272 8.0 0.035 -106.1 126.8 8.0 0.035 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 TYR A:248 A:272 11.0 0.048 -124.4 112.8 11.0 0.048 0.0
TYR F:248 G:272 11.0 0.048 -124.4 112.9 11.0 0.048 0.0
TYR I:248 D:272 12.0 0.052 -124.4 113.0 12.0 0.052 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 TYR A:234 A:272 11.0 0.048 -109.8 116.2 11.0 0.048 0.0 SO4
 7.585
 OH
 O4
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 TYR A:234 A:272 13.0 0.057 -93.0 109.9 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 TYR A:249 A:274 48.0 0.209 -129.2 133.0 48.0 0.209 0.0 HOH
 3.100
 N
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 TYR A:249 A:274 15.0 0.065 -106.8 106.1 15.0 0.065 0.0
TYR B:249 B:274 21.0 0.091 -107.3 110.0 21.0 0.091 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 TYR B:249 A:274 33.0 0.143 -95.4 110.4 33.0 0.143 0.0 HOH
 4.221
 OH
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 TYR A:272 A:272 7.0 0.03 -107.8 104.7