Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 8926603 . G A CCDS11148.1:NM_004822.2:c.913Gac>Aac_NP_004813.2:p.305D>N Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 ASP A:283 A:305 56.0 0.373 -87.4 78.4 56.0 0.373 0.0 HOH
 5.237
 N
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ASP A:284 A:305 64.0 0.427 -94.8 77.5 64.0 0.427 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ASP A:284 A:305 46.0 0.307 -87.8 71.1 46.0 0.307 0.0 NO3
 8.876
 N
 O3
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 ASP A:281 A:305 65.0 0.433 -94.7 77.5 65.0 0.433 0.0
ASP F:281 G:305 67.0 0.447 -94.7 77.4 67.0 0.447 0.0
ASP I:281 D:305 65.0 0.433 -94.8 77.5 65.0 0.433 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 ASP A:267 A:305 54.0 0.36 E -76.4 97.2 54.0 0.36 0.0 GOL
 7.833
 O
 O2
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 ASP A:267 A:305 59.0 0.393 -73.8 81.6 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASP A:282 A:307 46.0 0.307 -89.5 101.7 46.0 0.307 0.0 HOH
 9.493
 OD2
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASP A:282 A:307 37.0 0.247 -95.8 92.1 37.0 0.247 0.0
ASP B:282 B:307 36.0 0.24 -96.6 69.9 36.0 0.24 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 ASP B:282 A:307 47.0 0.313 -89.2 96.2 47.0 0.313 0.0 HOH
 7.173
 OD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 ASP A:305 A:305 51.0 0.34 -79.7 78.9