Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 9066153 . C A CCDS11148.1:NM_004822.2:c.1042Cgg>Agg_NP_004813.2:p.348R>R Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 ARG A:326 A:348 183.0 0.813 S -74.2 -46.0 183.0 0.813 0.0 CL
HOH
 4.259
7.297
 O
N
 CL
O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ARG A:327 A:348 212.0 0.942 S -93.0 -23.0 212.0 0.942 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ARG A:327 A:348 186.0 0.827 S -101.5 -20.6 186.0 0.827 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 ARG A:324 A:348 211.0 0.938 S -92.9 -23.1 203.0 0.902 0.036 F:O95631:0.036
ARG F:324 G:348 212.0 0.942 S -92.9 -23.2 206.0 0.916 0.026 I:O95631:0.027
ARG I:324 D:348 210.0 0.933 S -93.1 -22.8 198.0 0.88 0.053 A:O95631:0.053
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 ARG A:310 A:348 161.0 0.716 S -79.3 -40.5 161.0 0.716 0.0
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 ARG A:310 A:348 183.0 0.813 S -103.7 -23.7 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ARG A:325 A:350 208.0 0.924 S -98.7 -3.1 208.0 0.924 0.0 HOH
 2.749
 NH2
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ARG A:325 A:350 178.0 0.791 S -107.1 18.0 108.0 0.48 0.311 B:Q90922:0.311
ARG B:325 B:350 171.0 0.76 -116.2 82.7 90.0 0.4 0.36 A:Q90922:0.36
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 ARG B:325 A:350 170.0 0.756 S -97.9 1.4 170.0 0.756 0.0 SO4
HOH
 2.312
5.040
 NE
N
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 ARG A:348 A:348 189.0 0.84 S -108.7 -0.3