Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 9066234 . A C CCDS11148.1:NM_004822.2:c.1123Acc>Ccc_NP_004813.2:p.375T>P Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 THR A:353 A:375 7.0 0.05 E -105.5 171.0 7.0 0.05 0.0 HOH
 2.173
 OG1
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 THR A:354 A:375 8.0 0.057 E -116.4 161.2 8.0 0.057 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 THR A:354 A:375 8.0 0.057 E -118.2 164.8 8.0 0.057 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 THR A:351 A:375 25.0 0.179 -116.4 161.2 25.0 0.179 0.0
THR F:351 G:375 23.0 0.164 -116.3 161.1 23.0 0.164 0.0
THR I:351 D:375 23.0 0.164 -116.3 161.2 23.0 0.164 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 THR A:337 A:375 12.0 0.086 E -113.0 160.6 12.0 0.086 0.0
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 THR A:337 A:375 6.0 0.043 E -120.0 168.5 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 THR A:352 A:377 8.0 0.057 E -101.2 173.5 8.0 0.057 0.0 HOH
 5.273
 O
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 THR A:352 A:377 1.0 0.007 E -76.3 163.9 1.0 0.007 0.0
THR B:352 B:377 2.0 0.014 E -79.9 169.1 2.0 0.014 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 THR B:352 A:377 9.0 0.064 E -111.9 156.9 9.0 0.064 0.0 SO4
HOH
 9.350
6.296
 C
N
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 THR A:375 A:375 4.0 0.029 E -101.0 164.3