Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 9066309 . G A CCDS11148.1:NM_004822.2:c.1198Gcc>Acc_NP_004813.2:p.400A>T Homo sapiens netrin 1 (NTN1), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ove 1 O09118 99.31 0.0 X-RAY
 2015-02-25 ALA A:378 A:400 3.0 0.026 -87.7 -12.4 3.0 0.026 0.0 HOH
 2.979
 N
 O
7ne0 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ALA A:379 A:400 1.0 0.009 -84.7 -27.9 1.0 0.009 0.0
7ne1 1 O95631 100.0 0.0 X-RAY
 2021-03-31 ALA A:379 A:400 0.0 0.0 G -68.1 -25.5 0.0 0.0 0.0
7ndg 1 O95631 100.0 0.0 EM
 2021-03-31 ALA A:376 A:400 6.0 0.052 -84.7 -27.8 6.0 0.052 0.0
ALA F:376 G:400 6.0 0.052 -84.8 -27.9 6.0 0.052 0.0
ALA I:376 D:400 6.0 0.052 -84.8 -27.9 6.0 0.052 0.0
6fkq 1 O95631 100.0 0.0 X-RAY
 2018-03-21 ALA A:362 A:400 3.0 0.026 -99.1 -5.9 3.0 0.026 0.0
4urt 1 O95631 100.0 0.0 X-RAY
 2014-09-10 ALA A:362 A:400 1.0 0.009 -69.3 -19.3 NA NA NA
4plm 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ALA A:377 A:402 3.0 0.026 -54.9 -22.5 3.0 0.026 0.0 HOH
 7.244
 CB
 O
4pln 1 Q90922 90.74 0.0 X-RAY
 2014-06-18 ALA A:377 A:402 0.0 0.0 S -52.0 -34.2 0.0 0.0 0.0
ALA B:377 B:402 0.0 0.0 S -51.5 -36.6 0.0 0.0 0.0
4plo 2 Q90922 90.74 0.0 X-RAY
 2014-06-18 ALA B:377 A:402 1.0 0.009 -60.7 -15.2 1.0 0.009 0.0 HOH
 5.480
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o95631-f1 1 O95631 100.0 0.0 ALA A:400 A:400 0.0 0.0 S -63.6 -17.9