Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18236516 . C A CCDS11196.1:NM_004169.3:c.1018Gag>Tag_NP_004160.3:p.340E>* Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
 2021-01-20 GLU A:360 A:340 103.0 0.542 H -63.8 -48.4 103.0 0.542 0.0
6fl5 1 P34896 99.36 0.0 X-RAY
 2018-10-10 GLU A:330 A:340 98.0 0.516 H -63.6 -30.4 98.0 0.516 0.0
GLU B:330 D:340 92.0 0.484 H -67.0 -33.9 92.0 0.484 0.0
GLU C:330 G:340 95.0 0.5 H -62.6 -31.2 95.0 0.5 0.0
GLU D:330 J:340 94.0 0.495 H -69.7 -29.6 94.0 0.495 0.0
1bj4 1 P34896 99.36 0.0 X-RAY
 1999-08-16 GLU A:330 A:340 103.0 0.542 H -65.8 -34.3 103.0 0.542 0.0 HOH
 8.458
 CB
 O
1ls3 1 p07511 92.92 0.0 X-RAY
 2003-02-04 ALA A:339 A:300 55.0 0.478 H -63.9 -41.7 55.0 0.478 0.0
ALA B:339 B:300 57.0 0.496 H -56.2 -47.8 57.0 0.496 0.0 HOH
 3.050
 N
 O
ALA C:339 C:300 56.0 0.487 H -77.6 -41.3 56.0 0.487 0.0
ALA D:339 D:300 56.0 0.487 H -56.7 -50.1 56.0 0.487 0.0 HOH
 8.971
 O
 O
1rvu 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:339 A:340 60.0 0.522 H -64.0 -40.8 60.0 0.522 0.0
ALA B:339 B:340 62.0 0.539 H -63.7 -40.6 62.0 0.539 0.0
1rvy 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:339 A:340 57.0 0.496 H -63.4 -45.5 57.0 0.496 0.0
ALA B:339 B:340 57.0 0.496 H -62.4 -45.9 57.0 0.496 0.0
1rv3 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:339 A:340 59.0 0.513 H -61.6 -44.6 59.0 0.513 0.0
ALA B:339 B:340 59.0 0.513 H -60.0 -45.0 59.0 0.513 0.0
1rv4 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:339 A:340 58.0 0.504 H -64.4 -41.5 58.0 0.504 0.0
ALA B:339 B:340 59.0 0.513 H -62.2 -41.3 59.0 0.513 0.0
1cj0 1 P07511 93.4 0.0 X-RAY
 1999-05-06 ALA A:326 A:300 54.0 0.47 H -44.3 -54.0 54.0 0.47 0.0
ALA B:326 B:300 52.0 0.452 H -47.4 -54.7 52.0 0.452 0.0
1eji 1 P50431 91.19 0.0 X-RAY
 2000-11-03 ASP A:334 A:340 103.0 0.687 H -72.6 -56.3 103.0 0.687 0.0
ASP B:334 B:340 103.0 0.687 H -72.1 -55.6 103.0 0.687 0.0
ASP C:334 C:340 103.0 0.687 H -72.4 -56.3 103.0 0.687 0.0
ASP D:334 D:340 102.0 0.68 H -71.7 -56.9 102.0 0.68 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 GLU A:340 A:340 114.0 0.6 H -63.0 -51.6