Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18238881 . G A CCDS11196.1:NM_004169.3:c.923gCc>gTc_NP_004160.3:p.308A>V Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
 2021-01-20 ALA A:328 A:308 11.0 0.096 H -78.7 -38.6 11.0 0.096 0.0
6fl5 1 P34896 99.36 0.0 X-RAY
 2018-10-10 ALA A:298 A:308 11.0 0.096 H -74.0 -39.0 11.0 0.096 0.0
ALA B:298 D:308 10.0 0.087 H -77.9 -42.9 10.0 0.087 0.0
ALA C:298 G:308 12.0 0.104 H -75.0 -40.8 12.0 0.104 0.0
ALA D:298 J:308 11.0 0.096 H -76.4 -42.9 11.0 0.096 0.0
1bj4 1 P34896 99.36 0.0 X-RAY
 1999-08-16 ALA A:298 A:308 14.0 0.122 H -69.9 -38.0 14.0 0.122 0.0 HOH
 3.548
 CB
 O
1ls3 1 p07511 92.92 0.0 X-RAY
 2003-02-04 ALA A:307 A:268 13.0 0.113 H -73.6 -33.1 13.0 0.113 0.0 HOH
 3.933
 CB
 O
ALA B:307 B:268 13.0 0.113 H -80.1 -32.3 13.0 0.113 0.0 HOH
 3.571
 CB
 O
ALA C:307 C:268 12.0 0.104 H -76.6 -32.7 12.0 0.104 0.0 HOH
 3.279
 CB
 O
ALA D:307 D:268 12.0 0.104 H -80.5 -35.6 12.0 0.104 0.0 HOH
 3.423
 CB
 O
1rvu 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:307 A:308 13.0 0.113 H -73.0 -32.5 13.0 0.113 0.0 HOH
 3.544
 CB
 O
ALA B:307 B:308 14.0 0.122 H -72.8 -32.1 14.0 0.122 0.0 HOH
 3.568
 CB
 O
1rvy 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:307 A:308 14.0 0.122 H -68.2 -32.4 14.0 0.122 0.0 HOH
 3.533
 CB
 O
ALA B:307 B:308 14.0 0.122 H -68.5 -31.7 14.0 0.122 0.0 HOH
 3.225
 CB
 O
1rv3 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:307 A:308 12.0 0.104 H -74.8 -32.3 12.0 0.104 0.0 HOH
 3.633
 CB
 O
ALA B:307 B:308 12.0 0.104 H -75.0 -33.0 12.0 0.104 0.0 HOH
 3.587
 CB
 O
1rv4 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ALA A:307 A:308 11.0 0.096 H -75.2 -31.8 11.0 0.096 0.0 HOH
 3.743
 CB
 O
ALA B:307 B:308 12.0 0.104 H -75.5 -31.7 12.0 0.104 0.0 HOH
 3.786
 CB
 O
1cj0 1 P07511 93.4 0.0 X-RAY
 1999-05-06 ALA A:294 A:268 13.0 0.113 H -67.0 -46.5 13.0 0.113 0.0 HOH
 9.740
 O
 O
ALA B:294 B:268 14.0 0.122 H -60.8 -48.4 14.0 0.122 0.0 HOH
 8.989
 N
 O
1eji 1 P50431 91.19 0.0 X-RAY
 2000-11-03 ALA A:302 A:308 13.0 0.113 H -71.0 -41.9 13.0 0.113 0.0
ALA B:302 B:308 14.0 0.122 H -72.4 -40.5 14.0 0.122 0.0 HOH
 9.484
 CB
 O
ALA C:302 C:308 14.0 0.122 H -72.0 -40.3 14.0 0.122 0.0
ALA D:302 D:308 14.0 0.122 H -71.6 -40.5 14.0 0.122 0.0 HOH
 9.792
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 ALA A:308 A:308 12.0 0.104 H -69.4 -42.7