Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18243552 . G A CCDS11196.1:NM_004169.3:c.619Cga>Tga_NP_004160.3:p.207R>* Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
 2021-01-20 ARG A:227 A:207 43.0 0.191 S -121.8 -177.4 43.0 0.191 0.0
6fl5 1 P34896 99.36 0.0 X-RAY
 2018-10-10 ARG A:197 A:207 31.0 0.138 S -130.4 160.7 31.0 0.138 0.0
ARG B:197 D:207 30.0 0.133 S -133.7 156.4 30.0 0.133 0.0
ARG C:197 G:207 31.0 0.138 S -131.8 159.9 31.0 0.138 0.0
ARG D:197 J:207 4.0 NA S -119.6 163.9 4.0 NA NA
1bj4 1 P34896 99.36 0.0 X-RAY
 1999-08-16 ARG A:197 A:207 40.0 0.178 S -113.7 157.1 40.0 0.178 0.0 HOH
 3.174
 NH2
 O
1ls3 1 p07511 92.92 0.0 X-RAY
 2003-02-04 ARG A:206 A:179 39.0 0.173 S -118.7 166.6 39.0 0.173 0.0 HOH
 4.942
 O
 O
ARG B:206 B:179 37.0 0.164 S -114.3 165.4 37.0 0.164 0.0 GOL
HOH
 7.399
2.459
 C
O
 O3
O
ARG C:206 C:179 38.0 0.169 S -119.5 166.3 38.0 0.169 0.0 HOH
 3.769
 O
 O
ARG D:206 D:179 38.0 0.169 S -115.4 168.6 38.0 0.169 0.0 GOL
HOH
 6.574
6.799
 CB
C
 O3
O
1rvu 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:206 A:207 36.0 0.16 S -116.2 158.8 36.0 0.16 0.0 HOH
 2.593
 O
 O
ARG B:206 B:207 37.0 0.164 S -115.9 160.6 37.0 0.164 0.0 HOH
 2.717
 O
 O
1rvy 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:206 A:207 38.0 0.169 S -120.2 157.6 38.0 0.169 0.0 HOH
 2.677
 O
 O
ARG B:206 B:207 37.0 0.164 S -121.1 157.6 37.0 0.164 0.0 HOH
 3.081
 O
 O
1rv3 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:206 A:207 37.0 0.164 S -114.7 161.2 37.0 0.164 0.0 HOH
 2.603
 O
 O
ARG B:206 B:207 36.0 0.16 S -115.2 162.3 36.0 0.16 0.0 HOH
 2.692
 O
 O
1rv4 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:206 A:207 35.0 0.156 S -110.0 165.7 35.0 0.156 0.0 HOH
 2.558
 O
 O
ARG B:206 B:207 33.0 0.147 S -110.3 166.8 33.0 0.147 0.0 HOH
 2.607
 O
 O
1cj0 1 P07511 93.4 0.0 X-RAY
 1999-05-06 ARG A:193 A:179 41.0 0.182 S -108.5 165.6 41.0 0.182 0.0
ARG B:193 B:179 41.0 0.182 S -111.7 164.1 41.0 0.182 0.0 HOH
 7.560
 O
 O
1eji 1 P50431 91.19 0.0 X-RAY
 2000-11-03 ARG A:201 A:207 37.0 0.164 S -118.2 160.5 37.0 0.164 0.0
ARG B:201 B:207 35.0 0.156 S -119.1 161.0 35.0 0.156 0.0
ARG C:201 C:207 34.0 0.151 S -119.3 161.0 34.0 0.151 0.0
ARG D:201 D:207 34.0 0.151 S -119.4 160.1 34.0 0.151 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 ARG A:207 A:207 35.0 0.156 S -116.7 160.4