Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr17 18244076 . G A CCDS11196.1:NM_004169.3:c.571Cgc>Tgc_NP_004160.3:p.191R>C Homo sapiens serine hydroxymethyltransferase 1 (SHMT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6m5w 1 P34896 100.0 0.0 X-RAY
 2021-01-20 ARG A:211 A:191 115.0 0.511 H -68.3 -19.2 114.0 0.507 0.004 A:P34896:0.004
6fl5 1 P34896 99.36 0.0 X-RAY
 2018-10-10 ARG A:181 A:191 106.0 0.471 H -67.8 -25.0 106.0 0.471 0.0
ARG B:181 D:191 100.0 0.444 H -65.7 -24.9 99.0 0.44 0.004 D:P34896:0.004
ARG C:181 G:191 106.0 0.471 H -68.5 -22.7 106.0 0.471 0.0
ARG D:181 J:191 105.0 0.467 H -61.0 -24.3 105.0 0.467 0.0
1bj4 1 P34896 99.36 0.0 X-RAY
 1999-08-16 ARG A:181 A:191 103.0 0.458 H -72.1 -21.0 103.0 0.458 0.0 HOH
 3.735
 CG
 O
1ls3 1 p07511 92.92 0.0 X-RAY
 2003-02-04 ARG A:190 A:163 107.0 0.476 H -69.1 -22.7 107.0 0.476 0.0 HOH
 3.573
 NH1
 O
ARG B:190 B:163 109.0 0.484 H -78.1 -24.3 109.0 0.484 0.0 HOH
 4.679
 O
 O
ARG C:190 C:163 107.0 0.476 H -73.1 -21.3 107.0 0.476 0.0 GOL
HOH
 6.978
3.605
 NH2
CB
 O3
O
ARG D:190 D:163 109.0 0.484 H -78.7 -24.2 109.0 0.484 0.0 HOH
 4.725
 NH1
 O
1rvu 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:190 A:191 109.0 0.484 H -66.4 -28.6 109.0 0.484 0.0 HOH
 3.677
 CG
 O
ARG B:190 B:191 107.0 0.476 H -67.1 -28.8 107.0 0.476 0.0 HOH
 5.310
 O
 O
1rvy 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:190 A:191 109.0 0.484 H -70.6 -20.4 109.0 0.484 0.0 HOH
 3.314
 CG
 O
ARG B:190 B:191 111.0 0.493 H -70.9 -20.2 111.0 0.493 0.0 HOH
 5.463
 O
 O
1rv3 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:190 A:191 117.0 0.52 H -69.7 -24.2 117.0 0.52 0.0 HOH
 5.424
 O
 O
ARG B:190 B:191 114.0 0.507 H -69.5 -25.5 114.0 0.507 0.0 HOH
 5.420
 O
 O
1rv4 1 P07511 92.71 0.0 X-RAY
 2004-06-15 ARG A:190 A:191 117.0 0.52 H -73.5 -27.6 117.0 0.52 0.0 HOH
 5.549
 O
 O
ARG B:190 B:191 114.0 0.507 H -73.7 -27.5 114.0 0.507 0.0 HOH
 5.488
 O
 O
1cj0 1 P07511 93.4 0.0 X-RAY
 1999-05-06 ARG A:177 A:163 112.0 0.498 H -75.7 -27.9 112.0 0.498 0.0
ARG B:177 B:163 108.0 0.48 H -73.9 -21.8 108.0 0.48 0.0
1eji 1 P50431 91.19 0.0 X-RAY
 2000-11-03 SER A:185 A:191 53.0 0.461 H -69.9 -30.9 53.0 0.461 0.0 HOH
 4.598
 O
 O
SER B:185 B:191 53.0 0.461 H -70.9 -29.1 53.0 0.461 0.0
SER C:185 C:191 54.0 0.47 H -70.6 -29.7 54.0 0.47 0.0
SER D:185 D:191 52.0 0.452 H -70.9 -29.4 52.0 0.452 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p34896-f1 1 P34896 100.0 0.0 ARG A:191 A:191 120.0 0.533 H -64.5 -30.3